
In this paper, the kinetics of p53 in two cell lines with different degrees of sensitivity to chemotherapeutic drugs is studied. There is much research that has explored the p53 oscillation, but there are few comparisons between cells that are sensitive to drug treatment and those that are not. Here, the kinetics of the p53 system between etoposide-sensitive and etoposide-resistant cell lines in response to different drug doses and different protein synthesis time delays are studied and compared. First, the results showed that time delay is an important condition for p53 oscillation by producing Hopf bifurcation in both the etoposide-sensitive and etoposide-resistant cells. If the protein synthesis time delays are zero, the system cannot oscillate even the dose of the drug increases. Second, the time delay required for producing sustained oscillation in sensitive cells is shorter than the drug-resistant cells. In addition, the p53-Wip1 negative feedback loop in drug-resistant cells is relatively highly strengthened than the drug-sensitive cells. To sum up, p53 oscillation is controlled by time delay, drug dose, and the coupled negative feedback network including p53-mdm2 and p53-wip1. Moreover, in the two different types of cells, the control mechanisms are similar, but there are also differences.
Citation: Fang Yan, Changyong Dai, Haihong Liu. Oscillatory dynamics of p53 pathway in etoposide sensitive and resistant cell lines[J]. Electronic Research Archive, 2022, 30(6): 2075-2108. doi: 10.3934/era.2022105
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In this paper, the kinetics of p53 in two cell lines with different degrees of sensitivity to chemotherapeutic drugs is studied. There is much research that has explored the p53 oscillation, but there are few comparisons between cells that are sensitive to drug treatment and those that are not. Here, the kinetics of the p53 system between etoposide-sensitive and etoposide-resistant cell lines in response to different drug doses and different protein synthesis time delays are studied and compared. First, the results showed that time delay is an important condition for p53 oscillation by producing Hopf bifurcation in both the etoposide-sensitive and etoposide-resistant cells. If the protein synthesis time delays are zero, the system cannot oscillate even the dose of the drug increases. Second, the time delay required for producing sustained oscillation in sensitive cells is shorter than the drug-resistant cells. In addition, the p53-Wip1 negative feedback loop in drug-resistant cells is relatively highly strengthened than the drug-sensitive cells. To sum up, p53 oscillation is controlled by time delay, drug dose, and the coupled negative feedback network including p53-mdm2 and p53-wip1. Moreover, in the two different types of cells, the control mechanisms are similar, but there are also differences.
Tumor cells can be divided into drug-sensitive cells and drug-resistant cells. For sensitive tumor cells, drug resistance (such as gene mutation) is usually produced during chemotherapy, which makes the life of the tumor cells more tenacious and is not conducive to drug-induced apoptosis. In order to better treat tumors, we need to understand their inherent resistance mechanisms. For example, when a tumor cell is sensitive, it is easy to change from sensitive to resistant under what circumstances. Problems like these are worthy of our study. It is well known that more than 50% of cancer patients have mutations in the p53 gene clinically [1]. As an important tumor suppressor, it acts as a transcription factor to regulate the expression of downstream target genes to induce cell survival or death in response to acute stress [2,3]. Zhang et al. showed that under stress, cell survival or apoptosis is related to the number of pulses of p53 [4,5]. When subjected to a large enough damage or stimulation, a higher level p53 or sustained p53 pulse will be induced, which then triggers cell apoptosis. When the stimulus is weak or mild, a few p53 pulses will be produced, which then causes cell cycle arrest [6], thereby repairing the damaged gene and preventing it from being inherited to the next generation by means of cell division. Based on the importance of p53 in tumor therapy and cell fate decision making, the medical and academic community have made many efforts to develop new and effective p53-based anticancer therapies [7,8,9,10].
Based on the above analysis, it is reasonable to study cells that are sensitive and resistant to drugs from the perspective of the expressive character of the p53 transcription factor. There is a great deal of research that has shown that the expression level of p53 is regulated by Mdm2 (a p53-specific E3 ubiquitin ligase) and there is a negative regulatory loop between them. More specifically, p53 can promote the transcription and translation of Mdm2 which in turn can degrade p53 protein by promoting ubiquitination [11,12]. Furthermore, the p53-Mdm2 negative feedback loop is considered as the basis of p53 oscillation [13], and the functional mechanism of this feedback loop in p53 networks has been studied by many researchers [14,15]. In addition, Wip1 (wild-type p53-induced phosphatase 1) as a member of the PP2C and p53 target gene families is also important for the expression level of p53, which forms the second negative feedback loop with p53. In particular, similar to Mdm2, p53 also promotes transcription and translation of Wip1 that can, in turn, lead to dephosphorylation of its downstream target proteins including p53, Mdm2, ATM, and so on [16,17,18]. ATM (ataxia telangiectasia mutated kinase) is usually maintained at a basal level in normal cells. When exposed to external stimuli (such as DNA damage, radiation, and chemical drugs), the dimeric or multimeric form of ATM is rapidly converted to the active form of ATM by autophosphorylation [19]. The phosphorylated/activated ATM can directly bind to MDM2 and promote its phosphorylation so that blocks degradation of p53 and maintains the activity and stability of p53 through such an indirect action [20]. Research has shown that the ATM-p53-Wip1 negative feedback loop also contributes to the pulse of p53 [5,21]. Therefore, it is very necessary to understand the intrinsic mechanism of the coupled negative feedback loops of p53-Mdm2 and ATM-p53-Wip1 in sensitive cells and drug-resistant cells.
In recent years, there has been a tremendous amount of research on p53 tumor suppressor factor [22,23,24]. These results suggested that the negative feedback loop between p53 and Mdm2 has made a significant contribution to the occurrence of p53 oscillation that can decide the cell fate including survival and death in response to DNA damage or other stimulation [4,13,14,25,26,27]. In most of the above studies, protein synthesis including transcription and translation is regarded as an instantaneous process. However, it is well known that both of them are the basic steps of gene expression in cells, that is not only slow but also complex multi-stage reactions involving the sequential assembly of long molecules [28]. Therefore, transcription and translation are usually not completed in an instant, but need take a long time [29,30,31,32,33]. Therefore, pay attention to the impact of time delay needed in the important protein synthesis process on the p53 dynamic is necessary and meaningful.
In this paper, motivated by the above considerations, a new model including time delay needed in the protein synthesis process of Mdm2 and Wip1 is proposed based on the model established in [33]. The effects of time delay and parameters related to drug doses and the strength of the feedback loops in etoposide-sensitive (U-2 OS) and etoposide-resistant cell lines (MCF7) are studied via the analysis on the new model. The results indicated that different types and scales of time delay have different effects on the system and time delay corresponding to the transcriptional and translational of Mdm2 and Wip1 promoted by p53 is critical to the oscillation of p53. Moreover, the oscillation is a combinatorial result of time delay, drug dose and the strength of feedback loop involving p53.
In Figure 1, we present a schematic diagram of the network including p53, Mdm2, Wip1 and ATMp. When the cell is subjected to the chemotherapy drug Etoposide, a large amount of non-phosphorylated ATM is converted to phosphorylated ATM denoted by ATMp. ATMp stabilizes p53 from an inactive state to an active state by phosphorylating p53 at Ser15 and Ser20 [33,34,35,36]. Furthermore, the activated p53 can promote the expression level of Mdm2 and Wip1 protein by promoting transcription and translation. In turn, Mdm2 accelerates the degradation of p53, and Wip1 can dephosphorylate p53 to reduce its activity. A mathematical model is proposed by Ruizhen Yang et al. to describe the relationship among these molecules [33]. However, it is worth noticing that there are necessary time delays during the transcription and translation process of Mdm2 and Wip1 protein. Typically, it needs a certain time between the action of the transcription factor on the gene promoter and the appearance of the corresponding mature mRNA in the cytoplasm [37,38]. Similarly, the synthesis of a typical protein from mRNA also requires a certain translation delay [37,39]. Meanwhile, from a theoretical view, the time delay can usually lead to oscillation and even more complex dynamic behaviors of gene regulatory networks [40,41,42,43]. Based on the above considerations, the synthesis time delays of protein Mdm2 and Wip1 protein are incorporated in the previous model, which yields the following ordinary differential equation model:
{˙x=kp0−kmp(u(t),z(t))xy−γpx,˙y=km0+kpmxn1(t−τ1)Kn1pm(u(t−τ1),z(t−τ1))+xn1(t−τ1)−γm(u(t),z(t),γm0,γm1)y,˙z=kw0+kpwxn2(t−τ2)Kn2pw(u(t−τ2),z(t−τ2))+xn2(t−τ2)−γwz,˙u=SeaEto(ATMt−u)−Da0u, | (2.1) |
where
kmp(u(t),z(t))=kmp0Dp0+DwpzSp0+Dp0+Sapu+Dwpz, Kpm(u(t),z(t))=Kpm0Sp0+Dp0+Sapu+DwpzSp0+Sapu, Kpw(u(t),z(t))=Kpw0Sp0+Dp0+Sapu+DwpzSp0+Sapu, γm(u(t),z(t),γm0,γm1)=γm0(Dm0+Dwmz)+γm1(Sm0+Samu)Sm0+Dm0+Samu+Dwmz. |
In the above model, x,y,z and u represent the concentration of p53, Mdm2, Wip1 and ATMp respectively. The values and the specific biological meanings of the parameters in Eq (2.1) are given in Table 1 and Table 2 in the Supplementary Part. In this paper, we mainly focus on the effects of time delay and parameters related to drug doses and the strength of the feedback loops on the kinetic properties of p53, Mdm2, and Wip1 in the sensitive cells and drug-resistant cells under the action of Eto (Etoposide). The theoretical and analytical derivation is too tedious to read, so it is put in the Supplementary Part. Here, the numerical simulations are executed by using the software Mathematica 12.
In this section, the kinetics of the p53 pathway between sensitive and resistant cell lines in response to etoposide chemotherapeutic drugs is compared. Some theoretical derivations are given, which are put in the Supplementary Section due to the formulas involved in the derivation process being too interminable to read. Here, the numerical simulations are shown, which agree highly with the theoretical results. The parameter values used are shown in Table 1 and Table 2 in the Supplementary Section. All of them were selected based on the literature [33], only three types are expected. First, the time delays are evaluated on the basis of biological fact. Based on the conclusion that each consecutive intron splicing in mammalian cells required about 0.4 to 7.5 minutes [44,45], the number of introns within the genes of Mdm2 and Wip1 can be calculated in order to achieve the desired length of Mdm2 and Wip1 protein synthesis time delay τ1 and τ2. Second, drug dose is a human-driven changed parameter. Third, kpm and kpw is taken within small neighborhoods of the values in the literature [33].
Here, the effect of time delays on drug-sensitive cells when the Etoposide dose Eto=1. Firstly, it can be seen from Figure 2(a–d) that as the value of τ1 increases, the system changes from a stable steady state to an oscillation state. Moreover, the amplitude and period of the oscillation increases as τ1. In turn, as shown in Figure 3(a–c), the system barely changes and stays stable all the time although τ2 changes when τ1=0. Secondly, when τ1 is fixed at 1.5 (as shown in Figure 4(a–c)), as τ2 continues to increase, the oscillation appears gradually and then disappears and goes back to the stable state again. Moreover, the amplitude of the oscillation climbs up and then declines with τ2. In summary, τ1 can induce the system to oscillate separately, and τ2 cannot cause oscillation alone. If τ1 is fixed in a proper range, oscillations can occur with the increase of τ2 and then gradually vanished (Figure 4). When τ1 is large, τ2 still has a similar effect, but it has little effect on the system (Figure 5). The results indicated that the time delay corresponding to the synthesis of Mdm2 protein promoted by p53 can used to produce p53 oscillation that can trigger cell apoptosis or cell cycle arrest to avoid the damage information inherited to the next generation cells. However, the time delay corresponding to the synthesis of Wip1 protein promoted by p53 only play a supporting role in this process.
As shown in Figure 6, we take two sets of fixed time delays for τ1 and τ2. It is easy to observe from Figure 6(a–c) that Eto can not cause oscillation when τ1=τ2=0. However, when τ1>0 is shown in Figure 7, we can conclude that the oscillation is strengthened as the Eto value increases from Figure 7(a–c). However, the oscillation disappears and the system goes back to a stable state as the Eto value continues to increase Figure 7(d–e). From another point of view, whether the drug dose of Eto can induce oscillation of the p53 pathway depends on the value of time delays. The importance of time delay to the oscillation of the system is proved once again. In summary, the system oscillates when the value of Eto is within an appropriate range (the closed region in Figure 7f), and stabilizes when the value is far away. It is suggested that the drug dose is not as bigger as better to the treatment, but needs to control at an appropriate range.
Both Mdm2 and Wip1 form a negative feedback loop with p53 and can inhibit the p53 expression level. However, the combined inhibitory effect of the two is less clear. Below, we studied the effect of kpm (Rate constant of p53p-induced production of Mdm2) and kpw (Rate constant of p53p-induced production of Wip1) on the system to indirectly study the effect of the two feedback loops of p53-Mdm2 and p53-Wip1. Since τ2 has very little effect on the system in sensitive cell, it is treated as 0. For kpm and kpw, on the basis of the parameter value in [33], take the value of about one-tenth of them as the interval to obtain a series of images, where the range of kpm is from 0.7 to 1.174 and the range of kpw is from 0.1046 to 0.1796, respectively, as shown in Figure 8. On the one hand, comparing Figure 8(a–c) and (e–g), we can see that kpm has a significant impact on the system, and kpw has little effect on the system. On the other hand, Figure 8(d) and (h) showed that both kpm and kpw have the ability to induce Hopf bifurcation thereby changing the qualitative behavior. However, the bifurcation point in Figure 8(d) falls in the range (0.7, 1.174) and the Figure 8(h) does not in the range (0.1046, 0.1796). Therefore, in practice, the p53-Mdm2 negative feedback loop in sensitive cell lines plays a major role in inducing oscillation, and Wip1 has the effect on its amplitude. Thus, to master the cell fate decision, it is needed to regulate the strength of the p53-Mdm2 and p53-Wip1 negative feedback loops to induce the p53 oscillation and control its amplitude so that treat diseases.
First we study the effect of τ1 on drug-resistant cells. Similar to sensitive cell lines, τ1 alone can induce system oscillation, while τ2 can not do it as shown in Figures 9 and 10. By comparing Figure 2(a–d) and Figure 9(a–d), it can be seen that the critical value of τ1 to induce sustained oscillation of p53 in the sensitive cells is smaller than in the drug-resistant cells. In addition, the amplitudes and periods of the oscillation in the drug-resistant cells were significantly lower than those in sensitive cells. More importantly, the levels of Mdm2 and Wip1, especially the latter, were significantly higher in the drug-resistant cells than the sensitive cells, which may be the reason why the p53 level of the drug-resistant cells is not easy to increase.
Next we study the effect of τ2 on the system. The results shown in Figures 11 and 12 illuminated that the τ2 has a similar property in drug-resistant cells to drug-sensitive cells, that is properly sized τ2 is beneficial to the p53 oscillation, while too large τ2 can lead to the oscillation disappearing. By comparing Figures 4, 5 with Figures 11, 12, it is obvious that the amplitude of p53 oscillation is much smaller in drug-resistant cells than in the drug-sensitive cells, for Mdm2 and Wip1 oscillation, it is the opposite. This means that although the protein synthesis time delay of Wip1 plays a supporting role, it is crucial to the p53 oscillation and either too small or too big are not beneficial to it. Therefore, the protein synthesis time delay of Wip1 and the feedback loop of p53-Wip1 are of great significance to the cells. Maybe the sensitive switched to resistant is trigged via changes of the protein synthesis time delay of Wip1 and the feedback loop of p53-Wip1.
From Figure 13, it can be found that when τ1 and τ2 are both set to 0, the system will not oscillate with the increase of the value of Eto. In other words, the time delay of protein synthesis is necessary to produce p53 oscillation. If the protein synthesis is too fast, no matter how much drug dose imports, it also can not produce oscillation and also can not play block the cell damage inherited by the next generation. However, once a certain time delay exists, the value of Eto can also make the system lose its stability and induce oscillation as shown in Figure 14. Moreover, neither too big nor too small of the Eto can lead to oscillation. This means that only appropriate dose of drug can have therapeutic effects under the time delay with a proper range. Therefore, the cell fate decision is a result of the combination of time delay and drug dose. Comparing Figures 7 and 14, we can see that in order for the system to produce oscillations, drug-resistant cells require a larger dose of drug than sensitive cells.
When Eto=5 and τ1=2, as shown in Figure 15(a–c) and (e–g), both kpm and kpw obviously influence the amplitude of the oscillation. Figure 15(d) and (h) showed that both of them also have the ability to induce Hopf bifurcation thereby changing the qualitative behavior. However, the bifurcation points in Figure 15(d) fall out of the range (1.92, 2.88) and the Figure 15(h) does not in the range (0.696, 0.957). Therefore, in practice of the drug-resistant cells, the p53-Mdm2 and p53-Wip1 negative feedback loops have an effect on the amplitude of the oscillation, but can not induce oscillation, which is different from the drug-sensitive cells. Thus, triggering the oscillation in drug-resistant cells is more difficult than drug-sensitive cells.
Experiments suggested that the Mdm2-p53 negative feedback plays a primary role in producing oscillation, while wip1-p53 plays a secondary role [4,5]. In this paper, the dynamic effect of time delay within the coupled p53-Mdm2 and p53-wip1 negative feedback loop in two types of cells is compared. It is the first investigation to focus on the effects of time delays on the p53 pathway oscillation in drug-sensitive and drug-resistant cell lines. Here, the synergic effect of p53-Mdm2 and p53-wip1 negative feedback loop was also explained from the perspective of time delay. As shown in Figure 16, the time delay corresponding to the protein synthesis of Mdm2 induced by p53 is necessary to trigger oscillation. The critical value of bifurcation point is different between the drug-sensitive and drug-resistant cell lines, which demonstrated that to generation oscillation needed more time in drug-resistant cells than in drug-sensitive cells. Moreover, the period and amplitude of the p53 oscillation is smaller in drug-resistant cells than in drug-sensitive cells. However, the concentration of Mdm2 and Wip1 is much higher in drug-resistant cells than in drug-sensitive cells.
In specific research, we find that the system gradually stabilizes when the time delays τ1 and τ2 are both zero. To facilitate the study, we first consider τ2=0, and then use Hopf bifurcation theory to study the role of τ1 in the drug-sensitive cells (see the Supplementary Section). We find that the value of τ1 produces a Hopf bifurcation at τ01, and the oscillation corresponding to the limit cycle of the system is consistent with the numerical simulation results (Figure 2). Moreover, we studied the direction and period of Hopf bifurcation for sensitive cells. Theoretically, the amplitude and period of the oscillation became larger with the increase of time delay τ1, which is consistent with the numerical simulation results (Figure 2).
The synergy between τ1 and τ2 and the effect of drug dose Eto on the system are also researched through numerical simulation. The results show that the system can oscillate only when the value of Eto is in a region. The oscillation region is larger for drug-resistant cells than the drug-sensitive cells, as shown in Figure 17. This means that to produce oscillation it doesn't need too much drug in sensitive cells, but the resistant cells are on the contrary. Moreover, the time delay can cause the oscillation to happen in advance and also enhance it. Thus, the intensity of the oscillation can be adjusted by changing the value of Eto and the time delay τ1.
In addition, the two negative feedback loops of p53-Mdm2 and p53-Wip1 were studied indirectly by studying the effects of kpm and kpw on the system. In theory, both of the kpm and kpw can change the state of the cells between stable state and oscillation state, and the direction of them are opposite. However, in practice, in resistant cells, they can only regulate the amplitude of the oscillation. But in sensitive cells, kpm can not only regulate the amplitude but also can induce oscillation.
The research in this paper shows that time delay is crucial for producing oscillation of the coupled negative feedback loops including p53-Mdm2 and p53-Wip1. Time delay can regulate the system to generate oscillations and the period and amplitude of oscillations. And the oscillations can be controlled by time delay and Eto dose. This may provide a new perspective for the medical treatment of drug-resistant cells.
The authors express gratitude to the anonymous referee for his/her helpful suggestions and the partial supports of the National Natural Science Foundations of China (12062027 and 12162032), Cultivating Plan Program for the Leader in Science and Technology (2019HB015), Ten Thousand Talent Plans for Young Top-notch Talents, and Fundamental Research Projects (LS21005) of Yunnan Province.
The authors declare there is no conflicts of interest.
The parameter value and their biological significance used in the main body are given in Table S1 and Table S2.
Parameter | Description | value | Reference |
kp0 | Basal production rate of p53 | 1.3396/h | [33] |
km0 | Basal production rate of Mdm2 | 0.08/h | [33] |
kw0 | Basal production rate of Wip1 | 0.105/h | [33] |
kpm | Rate constant of p53p-induced production of Mdm2 | 0.9172/h | [33] |
kpw | Rate constant of p53p-induced production of Wip1 | 0.1496/h | [33] |
n1 | Hill coefficient of p53p-induced production of Mdm2 | 4 | [33] |
n2 | Hill coefficient of p53p-induced production of Wip1 | 4 | [33] |
Kpm0 | Michaelis constant for p53p-induced production of Mdm2 | 0.4025 | [33] |
Kpw0 | Michaelis constant for p53p-induced production of Wip1 | 0.4025 | [33] |
kmp0 | Rate constant of Mdm2-induced degradation of p53u | 4.038/h | [33] |
γp | Mdm2-independent degradation rate constant of p53 | 0.1/h | [33] |
γm0 | Degradation rate constant of Mdm2u | 0.2579/h | [33] |
γm1 | Degradation rate constant of Mdm2p | 7.7362/h | [33] |
γw | Degradation rate constant of Wip1 | 0.4 | [33] |
Sea | Rate constant of etoposide-induced phosphorylation of ATM | 1/μMh | [33] |
Da0 | Rate constant of dephosphorylation of ATM | 80/h | [14] |
Sp0 | Rate constant of ATM-independent phosphorylation of p53 | 0.25 | [33] |
Sap | Rate constant of ATM-mediated phosphorylation of p53 | 0.8335/h | [33] |
Dp0 | Rate constant of Wip1-independent dephosphorylation of p53 | 0.75/h | [33] |
Dwp | Rate constant of Wip1-mediated dephosphorylation of p53 | 0.25/h | [33] |
Sm0 | Rate constant of ATM-independent phosphorylation of Mdm2 | 0.0153/h | [33] |
Sam | Rate constant of ATM-mediated phosphorylation of Mdm2 | 0.283 | [33] |
Dm0 | Rate constant of Wip1-independent dephosphorylation of Mdm2 | 0.5/h | [33] |
Dwm | Rate constant of Wip1-mediated dephosphorylation of Mdm2 | 0.5/h | [33] |
ATMt | Total amount of ATM | 16 | [33] |
τ1 | Time delay in production of Mdm2 | 0.5–3/h | Estimated |
τ2 | Time delay in production of Wip1 | 0.5–3/h | Estimated |
Parameter | Description | value | Reference |
kp0 | Basal production rate of p53 | 2.4138/h | [33] |
km0 | Basal production rate of Mdm2 | 0.2/h | [33] |
kw0 | Basal production rate of Wip1 | 0.35/h | [33] |
kpm | Rate constant of p53p-induced production of Mdm2 | 2.3854/h | [33] |
kpw | Rate constant of p53p-induced production of Wip1 | 0.8702/h | [33] |
n1 | Hill coefficient of p53p-induced production of Mdm2 | 4 | [33] |
n2 | Hill coefficient of p53p-induced production of Wip1 | 4 | [33] |
Kpm0 | Michaelis constant for p53p-induced production of Mdm2 | 0.4025 | [33] |
Kpw0 | Michaelis constant for p53p-induced production of Wip1 | 0.4025 | [33] |
kmp0 | Rate constant of Mdm2-induced degradation of p53u | 2.7048/h | [33] |
γp | Mdm2-independent degradation rate constant of p53 | 0.25/h | [33] |
γm0 | Degradation rate constant of Mdm2u | 0.1804/h | [33] |
γm1 | Degradation rate constant of Mdm2p | 3.6088/h | [33] |
γw | Degradation rate constant of Wip1 | 0.4 | [33] |
Sea | Rate constant of etoposide-induced phosphorylation of ATM | 1/μMh | [33] |
Da0 | Rate constant of dephosphorylation of ATM | 30/h | [14] |
Sp0 | Rate constant of ATM-independent phosphorylation of p53 | 0.25 | [33] |
Sap | Rate constant of ATM-mediated phosphorylation of p53 | 0.4335/h | [33] |
Dp0 | Rate constant of Wip1-independent dephosphorylation of p53 | 0.75/h | [33] |
Dwp | Rate constant of Wip1-mediated dephosphorylation of p53 | 0.25/h | [33] |
Sm0 | Rate constant of ATM-independent phosphorylation of Mdm2 | 0.0479/h | [33] |
Sam | Rate constant of ATM-mediated phosphorylation of Mdm2 | 0.2830 | [33] |
Dm0 | Rate constant of Wip1-independent dephosphorylation of Mdm2 | 0.5/h | [33] |
Dwm | Rate constant of Wip1-mediated dephosphorylation of Mdm2 | 0.5/h | [33] |
ATMt | Total amount of ATM | 3.5 | [33] |
τ1 | Time delay in production of Mdm2 | 0.5–3/h | Estimated |
τ2 | Time delay in production of Wip1 | 0.5–3/h | Estimated |
Without loss of generality, in this part, the parameters are chosen from Table 1 which corresponds to the drug-sensitive cells. For the drug-resistant cells, the approach is similar. All the calculation are performed via the software Mathematica 12.
Due to the high degree of nonlinearity in model (2.1), we only calculate the numerical equilibrium points. Submit the parameters in Table 1 into the model (2.1) and let all the right hands to zero, then we get a set of algebraic equations. Solving these linear equations by Mathematica Software, we can easily obtain the only positive equilibrium point (X, Y, Z, U) = (1.059, 0.4292, 0.3961, 0.1975).
Let's study the effects of τ1 first. For the sake of convenience, suppose τ2=0. Obviously, all the functions in the right hand of model (2.1) are derivative at the neighborhood of the positive equilibrium point. Make Taylor expand for Eq (2.1) at the equilibrium point, which is a tedious and classic formula based process and is performed by Mathematica Software. Then neglecting the nonlinear part, the rest is linear equations, which is
{˙x=c1x(t)+c2y(t)+c3z(t)+c4u(t),˙y=c5x(t−τ1)+c6y(t)+c7z(t−τ1)+c8z(t)+c9u(t−τ1)+c10u(t),˙z=c11x(t)+c12z(t)+c13z(t)+c14u(t),˙u=c15u(t), | (4.1) |
where
c1=−Ykmp0(Dp0+ZDwp)USap+Dp0+ZDwp+Sp0−γp, c2=−Xkmp0(Dp0+ZDwp)USap+Dp0+ZDwp+Sp0,c3=XYDwpkmp0(Dp0+ZDwp)(USap+Dp0+ZDwp+Sp0)2−XYDwpkmp0USap+Dp0+ZDwp+Sp0, c4=XYSapkmp0(Dp0+ZDwp)(USap+Dp0+ZDwp+Sp0)2,c5=n1kpmXn1−1(Kpm0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n1+Xn1−n1kpmX2n1−1((Kpm0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n1+Xn1)2, c6=−γm1(USam+Sm0)+γm0(Dm0+ZDwm)USam+Dm0+ZDwm+Sm0, c7=−n1DwpkpmKpm0Xn1(Kpm0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n1−1(USap+Sp0)((Kpm0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n1+Xn1)2, c8=YDwm(γm1(USam+Sm0)+γm0(Dm0+ZDwm))(USam+Dm0+ZDwm+Sm0)2−YDwmγm0USam+Dm0+ZDwm+Sm0, |
c9=−n1kpmXn1(SapKpm0USap+Sp0−SapKpm0(USap+Dp0+ZDwp+Sp0)(USap+Sp0)2)(Kpm0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n1−1((Kpm0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n1+Xn1)2, c10=YSam(γm1(USam+Sm0)+γm0(Dm0+ZDwm))(USam+Dm0+ZDwm+Sm0)2−YSamγm1USam+Dm0+ZDwm+Sm0,c11=n2kpwXn2−1(Kpw0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n2+Xn2−n2kpwX2n2−1((Kpw0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n2+Xn2)2,c12=−n2DwpkpwKpw0Xn2(Kpw0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n2−1(USap+Sp0)((Kpw0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n2+Xn2)2,c13=−γw,c14=−n2kpwXn2(SapKpw0USap+Sp0−SapKpw0(USap+Dp0+ZDwp+Sp0)(USap+Sp0)2)(Kpw0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n2−1((Kpw0(USap+Dp0+ZDwp+Sp0)USap+Sp0)n2+Xn2)2,c15=−Da0−EtoSea. |
Furthermore, we can get the characteristic equations of equations (2.1)
(c15−λ)e−λτ1((c12+c13−λ)((c1−λ)(λ−c6)(−eλτ1)−c2c5)+c11(−c6c3eλτ1+c3λeλτ1+c2c8eλτ1+c2c7))=0. | (4.2) |
Simplify (4.2) to get:
λ4+λ3m1+λ2m2+λm3+m4+e−λτ1(λ2m5+λm6+m7)=0, | (4.3) |
where
m1=−c1−c6−c12−c13−c15, m2=c1c6+c12c6+c13c6+c15c6−c3c11+c1c12+c1c13+c1c15+c12c15+c13c15, m3=c3c6c11−c2c8c11+c3c15c11−c1c6c12−c1c6c13−c1c6c15−c1c12c15−c6c12c15−c1c13c15−c6c13c15, m4=−c3c6c11c15+c2c8c11c15+c1c6c12c15+c1c6c13c15, m5=−c2c5, m6=−c2c7c11+c2c5c12+c2c5c13+c2c5c15, m7=c2c7c11c15−c2c5c12c15−c2c5c13c15. |
In order to theoretically analyze the sufficient conditions for generating oscillations, we assume that iw(w>0) is a root of Eq (4.3). Then, bring iw into Eq (4.3) to get:
−im1w3−m5w2(cos(τ1w)−isin(τ1w))−m2w2+im6w(cos(τ1w)−isin(τ1w))+m7(cos(τ1w)−isin(τ1w))+im3w+m4+w4=0. | (4.4) |
Separating the real part and the imaginary part we can get
{−m5w2cos(τ1w)−m2w2+m6wsin(τ1w)+m7cos(τ1w)+m4+w4=0,−m5w2cos(τ1w)−m2w2+m6wsin(τ1w)+m7cos(τ1w)+m4+w4=0. | (4.5) |
Then there will be
{cos(wτ1)=−m7w4−m1m6w4+m3m6w2−m2m7w2+m4m7m5m6w3+m26w2−m5m7w2+m27,sin(wτ1)=−m5w6−m1m5w5+m6w5−m2m5w4+m3m5w3+m4m5w2m5m6w3+m26w2−m5m7w2+m27+m2m6w3−m1m7w3−m4m6w+m3m7wm5m6w3+m26w2−m5m7w2+m27. | (4.6) |
The above equations are squared and then the equations of the equal sign are added separately. Then, there will be
r1w12+r2w11+r3w10+r4w9+r5w8+r6w7+r7w6+r8w5+r9w4+r10w3+r11w2+r12=0, | (4.7) |
where
r1=m25,r2=2m5m6−2m1m25,r3=m21m25−2m2m25−2m1m6m5+m26,r4=2m1m2m25+2m3m25−4m2m6m5+2m1m7m5,r5=m26m21−2m5m7m21−2m3m25m1+2m2m5m6m1+m22m25+2m4m25−2m2m26+m27+2m3m5m6,r6=2m5m6m22−2m3m25m2−2m1m5m7m2−2m1m4m25+4m4m5m6−2m3m5m7,r7=m23m25−m26m25−2m2m4m25−2m2m3m6m5−2m1m4m6m5+4m1m3m7m5+m22m26−2m1m3m26+2m4m26+m21m27−2m2m27,r8=−2m5m36−4m2m4m5m6+2m25m7m6+2m3m4m25+2m2m3m5m7+2m1m4m5m7,r9=−m46+m23m26−2m2m4m26+2m5m7m26+2m3m4m5m6+m24m25+m22m27−m25m27−2m1m3m27+2m4m27−2m23m5m7,r10=2m5m6m24−2m3m5m7m4−2m5m6m27,r11=2m5m37+m23m27−2m26m27−2m2m4m27+m24m26,r12=m24m27−m47. |
Let function f(w)=r1w12+r2w11+r3w10+r4w9+r5w8+r6w7+r7w6+r8w5+r9w4+r10w3+r11w2+r12.\\
The carry-in parameters can be obtained by calculation f(0)=r12<0, f(2)>0. Therefore, there exists a positive root w0≈1.056501 of Eq (4.7). From (4.6) we can get
τ(j)1=arccos(−−m1m6w40+m7w40+m3m6w20−m2m7w20+m4m7m5m6w30+m26w20−m5m7w20+m27)w0+2πjw0, |
where j=0,1,2,3⋯. And we define τ01=min{τ(j)1>0}+∞j=0. Thus, when τ1=τ01, Eq (4.3) has a pair of pure imaginary roots ±iw0.
Furthermore, we let λ(τ1)=α(τ1)+iw(τ1) is a root of (4.3), α(τ01)=0 and iw(τ01)=w0. We will get dRe(λ(τ1))dτ1|τ1=τ01>0, and the specific derivation is as follows. Bring λ(τ1) into (4.4) and then differentiate τ1 at both ends of the equation to get
1λ′(τ1)=eτ1λ(τ1)(4λ3(τ1)+3m1λ2(τ1)+2m2λ(τ1)+m3)m5λ3(τ1)+m6λ2(τ1)+m7λ(τ1)+−m5τ1λ2(τ1)+2m2λ(τ1)−m6τ1λ(τ1)−m7τ1+m6m5λ3(τ1)+m6λ2(τ1)+m7λ(τ1). | (4.8) |
Take w=w0,τ1=τ01, then combining (4.6), (4.8) and λ(τ01)=iw0(τ01) we can get
ℜ(1λ′(τ1))|τ1=τ01,w=w0=D2−D4D5D3−D6D7D3D1>0, | (4.9) |
where
D1=m25w60+m26w40−2m5m7w40+m27w20,D2=−2m25w40−m26w20+2m5m7w20,D3=m5m6w30+m26w20−m5m7w20+m27D4=3m1m5w50−4m6w50−m3m5w30+2m2m6w30−3m1m7w30+m3m7w0,D5=m5w60−m1m5w50+m6w50−m2m5w40+m3m5w30−m2m6w30+m1m7w30+m4m5w20+m4m6w0−m3m7w0,D6=−m1m6w40+m7w40+m3m6w20−m2m7w20+m4m7,D7=4m5w60−2m2m5w40+3m1m6w40−4m7w40−m3m6w20+2m2m7w20. |
Therefore, sign{dℜ[λ(τ)]dτ|τ1=τ01}=sign{ℜ[1λ′(τ)]|τ1=τ01}>0, which is that the root of characteristic equation (4.3) crosses the virtual axis from left to right as λ(τ01)=±iw0. We can assert that the system experienced a Hopf bifurcation at τ1=τ01. Specifically, the system is progressively stable when τ1<τ01, and the system is oscillating when τ1>τ01. Therefore, for the system we studied, the dynamic properties of p53, Mdm2, and Wip1 can be theoretically predicted and adjusted by time delay.
In the previous section, we have obtained that the system (2.1) undergoes a Hopf bifurcation or Turing-Hopf bifurcation at the positive constant (X,Y,Z,U) when τ1=τ01 and let τ2=0 for convenience. In this section, we will study the properties of Hopf bifurcation and the stability of bifurcated periodic solutions by using the normal form theory and central manifold theory due to Hassard, Kazarinoff and Wan [46].
Throughout this section, we always assume that system (2.1) undergoes Hopf bifurcation when τ1=τ01 at the positive equilibrium (X,Y,Z,U), and the corresponding purely imaginary roots of the characteristic equation are ±iw0. Subsequently, we let ˉx=x(t)−X,ˉy=y(t)−Y,ˉz=z(t)−Z,ˉu=u(t)−U. And we still denote ˉx,ˉy,ˉz,ˉu as x,y,z,u. Moreover, let τ1=τ01+γ normalizing the time delay τ1 by the time-scaling t→t/τ1, and the system (2.1) transform to
{˙x=(γ+τ01)f1(x,y,z,u),˙y=(γ+τ01)(f21(x,y,z,u)−f22(x,y,z,u)),˙z=(γ+τ01)f3(x,y,z,u),˙u=(γ+τ01)(Eto∗Sea(ATMt−u(t))−Da0u(t)). | (4.10) |
f1(x,y,z,u)=kp0−kmp(u(t),z(t))xy−γpx,f21(x,y,z,u)=km0+kpmxn1(t−1)Kn1pm(u(t−1),z(t−1))+xn1(t−1),f22(x,y,z,u)=γm(u(t),z(t),γm0,γm1)y,f3(x,y,z,u)=kw0+kpwxn2(t)Kn2pw(u(t),z(t))+xn2(t)−γwz. |
By expanding Taylor on the left end of Eq (4.10) at the equilibrium point (X, Y, Z, U), we can get
x′(t)=(τ01+γ)(f1r+12(u2f1uu+2uxf1ux+2uyf1uy+2uzf1uz+x2f1xx+2xyf1xy+2xzf1xz+2yzf1yz+z2f1zz)+16(u3f1uuu+3u2xf1uux+3u2yf1uuy+3u2zf1uuz+3ux2f1uxx+6uxyf1uxy+6uyzf1uyz+3uz2f1uzz+x3f1xxx+3x2yf1xxy+3x2zf1xxz+6xyzf1xyz+3xz2f1xzz+3yz2f1yzz+z3f1zzz+6uxzf1uxz)+uf1u+xf1x+yf1y+zf1z),y′(t)=(τ01+γ)(f21r−f22r+12(f21uuu(t−1)2+2f21uxu(t−1)x(t−1)+2f21uzu(t−1)z(t−1)+f21xxx(t−1)2+2f21xzx(t−1)z(t−1)+f21zzz(t−1)2)+16(f21uuuu(t−1)3+3f21uuxu(t−1)2x(t−1)+3f21uuzu(t−1)2z(t−1)+3f21uxxu(t−1)x(t−1)2+6f21uxzu(t−1)x(t−1)z(t−1)+3f21uzzu(t−1)z(t−1)2+f21xxxx(t−1)3+3f21xxzx(t−1)2z(t−1)+3f21xzzx(t−1)z(t−1)2+f21zzzz(t−1)3)+f21uu(t−1)+f21xx(t−1)+f21zz(t−1)+12(−u2f22uu−2uyf22uy−2uzf22uz−2yzf22yz−z2f22zz)+16(−u3f22uuu−3u2yf22uuy−3u2zf22uuz−6uyzf22uyz−3uz2f22uzz−3yz2f22yzz−z3f22zzz)−uf22u−yf22y−zf22z), |
z′(t)=(τ01+γ)(f3r+12(u2f3uu+2uxf3ux+2uzf3uz+x2f3xx+2xzf3xz+z2f3zz)+16(u3f3uuu+3u2xf3uux+3u2zf3uuz+3ux2f3uxx+3uz2f3uzz+x3f3xxx+3x2zf3xxz+3xz2f3xzz+z3f3zzz+6uxzf3uxz)+uf3u+xf3x+zf3z),u′(t)=(τ01+γ)(u(−Da0−Eto∗Sea)). |
where f1r,f21r expand Taylor's remainder above third order on behalf of Taylor. f1x,f1xy and f1xyz stands for the value of ∂f1∂x,∂∧2f1∂x∂y and ∂∧3f1∂x∂y∂z at (X, Y, Z, U) respectively. The meaning of other symbols can be deduced by the same principle. Let
U =(u1(t),u2(t),u3(t),u4(t))T =(x(t),y(t),z(t),u(t))T. |
And define C=C([−1,0],R4), then (4.10) becomes to
˙U=Lγ(Ut)+f(γ,Ut), | (4.11) |
where Lγ:C→R4,f:R×C→R4 whose specific form is as follows
Lγ(ϕ)=(γ+τ01)(ϕ1(0)ϕ2(0)ϕ3(0)ϕ4(0))(f1xf1yf1zf1u0−f22y−f22z−f22uf3x0f3zf3u000−Da0−Eto∗Sea)+(γ+τ01)(ϕ1(−1)ϕ2(−1)ϕ3(−1)ϕ4(−1))(0000f21x0f21zf21u00000000), | (4.12) |
f(γ,ϕ)=(EFR0), | (4.13) |
E=f1r+12(ϕ4(0)2f1uu+2ϕ4(0)ϕ1(0)f1ux+2ϕ2(0)ϕ4(0)f1uy+2ϕ3(0)ϕ4(0)f1uz+ϕ1(0)2f1xx+2ϕ2(0)ϕ1(0)f1xy+2ϕ3(0)ϕ1(0)f1xz+2ϕ2(0)ϕ3(0)f1yz+ϕ3(0)2f1zz)+16(6ϕ4(0)ϕ1(0)ϕ3(0)f1uxz+ϕ4(0)3f1uuu+3ϕ4(0)2ϕ1(0)f1uux+3ϕ4(0)2ϕ2(0)f1uuy+3ϕ4(0)2ϕ3(0)f1uuz+3ϕ4(0)ϕ1(0)2f1uxx+6ϕ4(0)ϕ1(0)ϕ2(0)f1uxy+6ϕ4(0)ϕ2(0)ϕ3(0)f1uyz+3ϕ4(0)ϕ3(0)2f1uzz+ϕ3(0)3f1xxx+3ϕ2(0)ϕ3(0)2f1xxy+3ϕ2(0)2ϕ3(0)f1xxz+6ϕ1(0)ϕ2(0)ϕ3(0)f1xyz+3ϕ1(0)ϕ3(0)2f1xzz+3ϕ2(0)ϕ3(0)2f1yzz+ϕ3(0)3f1zzz), |
F=f21r−f22r+12(−ϕ4(0)2f22uu−2ϕ4(0)ϕ2(0)f22uy−2ϕ4(0)ϕ3(0)f22uz−2ϕ2(0)ϕ3(0)f22yz−f22zzϕ3(0)2)+16(−ϕ4(0)3f22uuu−3ϕ4(0)2ϕ2(0)f22uuy−3ϕ4(0)2ϕ3(0)f22uuz−6ϕ4(0)ϕ2(0)ϕ3(0)f22uyz−3ϕ4(0)ϕ3(0)2f22uzz−3ϕ2(0)ϕ3(0)2f22yzz−f22zzzϕ3(0)3)+12(ϕ4(−1)2f21uu+2ϕ4(−1)ϕ1(−1)f21ux+2ϕ3(−1)ϕ4(−1)f21uz+ϕ1(−1)2f21xx+2ϕ1(−1)ϕ3(−1)f21xz+ϕ3(−1)2f21zz)+16(ϕ4(−1)3f21uuu+3ϕ1(−1)ϕ4(−1)2f21uux+3ϕ3(−1)ϕ4(−1)2f21uuz+3ϕ4(−1)ϕ1(−1)2f21uxx+ϕ1(−1)3f21xxx+6ϕ3(−1)ϕ4(−1)ϕ1(−1)f21uxz+3ϕ3(−1)2ϕ4(−1)f21uzz+3ϕ3(−1)ϕ1(−1)2f21xxz+3ϕ1(−1)ϕ3(−1)2f21xzz+ϕ3(−1)3f21zzz), |
R=f3r+12(ϕ4(0)2f3uu+2ϕ4(0)ϕ1(0)f3ux+2ϕ3(0)ϕ4(0)f3uz+ϕ1(0)2f3xx+2ϕ3(0)ϕ1(0)f3xz+ϕ3(0)2f3zz)+16(3u2ϕ1(0)f3uux+ϕ4(0)3f3uuu+3zϕ4(0)2+3ϕ1(0)2ϕ4(0)f3uxx+6ϕ1(0)ϕ4(0)zf3uxz+3ϕ3(0)2ϕ4(0)f3uzz+ϕ1(0)3f3xxx+3ϕ3(0)ϕ1(0)2f3xxz+3ϕ3(0)2ϕ1(0)f3xzz+ϕ3(0)3f3zzz), |
where ϕ=(ϕ1(t),ϕ2(t),ϕ3(t),ϕ4(t))T∈C. According to the Riesz representation theorem there exists a 4×4 matrix function η(θ,γ), which is bounded variogram on θ∈[−1,0] such that Lγϕ=∫0−1dη(θ,γ)ϕ(θ) for ϕ∈C([−1,0],R4).
In fact, we can choose
η(θ,γ)=(γ+τ01)(f1xf1yf1zf1u0−f22y−f22z−f22uf3x0f3zf3u000−Da0−Eto∗Sea)δ(θ)+(γ+τ01)(0000f21x0f21zf21u00000000)δ(θ+1), | (4.14) |
where δ(θ) is Dirac delta function. And we define
Λγϕ={dϕ(θ)dθ,θ∈[−1,0),∫0−1dη(θ,γ)ϕ(θ),θ=0,and Rγϕ={0,θ∈[−1,0),f(γ,ϕ),θ=0. | (4.15) |
Obviously, we can transform (4.11) to the following form
˙Ut=ΛγUt+RγUt, | (4.16) |
where Ut(θ)=U(t+θ). For ψ∈C1([−1,0],(R4)∗), we define
Λ∗γψ(s)={−dψ(s)ds,θ∈(0,−1],∫0−1dηT(t,γ)ψ(−t),s=0, | (4.17) |
and
⟨ψ(s),ϕ(θ)⟩=ˉψ(s)ϕ(0)−∫0−1∫θξ=0ˉψ(ξ−θ)dη(θ)ϕ(ξ)dξ, | (4.18) |
which is a bilinear inner product. Obviously, Λ0 and Λ∗0 are adjoint operators for each other. In addition, ±iw0τ01 are the eigenvalues of Λ0. Therefore, they are also eigenvalues of Λ∗0. We let q(θ) be the eigenvector of Λ0 corresponding to iw0τ01 and q∗(s) be the eigenvector of Λ∗0 corresponding to −iw0τ01, which meet the following conditions
q(θ)=eiw0τ01θ(1,v1,v2,v3)T, q∗(s)=Geiw0τ01s(1,v∗1,v∗2,v∗3). | (4.19) |
From Λ0q(0)=iw0τ01q(0) and Λ∗0q∗(0)=−iw0τ01q∗(0), it is easy to deduce
v1=−e−iw0τ01(c11c7+c11c8eiw0τ01−c12c5−c13c5+ic5w0)(w0+ic6)(ic12+ic13+w0),v2=−c11c12+c13−iw0,v3=0,v∗1=−c2c6+iw0,v∗2=V21V22,v∗3=V31V32,V21=ic2c9c14eiτ1w0−ic11w20−c6c11w0+c4c14w0−c11c15w0−ic4c6c14+ic2c10c14+ic6c11c15,V22=(w0−ic6)(−ic12w0−ic13w0−ic15w0+c214−c12c15−c13c15+w20),V31=c2c9w0eiτ01w0−ic2c9c12eiτ01w0−ic2c9c13eiτ01w0−ic4w20−c4c6w0+c2c10w0−c4c12w0−c4c13w0+c11c14w0+ic4c6c12−ic2c10c12+ic4c6c13−ic2c10c13−ic6c11c14,V32=−(w0−ic6)(−ic12w0−ic13w0−ic15w0+c214−c12c15−c13c15+w20). |
From
⟨q∗,q⟩=ˉq∗(0)q(0)−∫0−1∫θξ=0ˉq∗(ξ−θ)dη(θ)q(ξ)dξ=ˉq∗(0)q(0)+ˉq∗(0)τ01(0000f21x0f21zf21u00000000)e−iw0τ01q(0)=ˉG[τ01¯v1∗e−iw0τ01(f21uv3+f21x+f21zv2)+v1¯v1∗+v2¯v2∗+v3¯v3∗+1], |
and making ⟨q∗,q⟩=1, we let ˉG=1τ01¯v1∗e−iw0τ01(f21uv3+f21x+f21zv2)+v1¯v∗1+v2¯v∗2+v3¯v∗3+1. And then G=1τ01v1∗eiw0τ01(f21u¯v3+f21x+f21z¯v2)+v∗1¯v1+v∗2¯v2+v∗3¯v3+1.
The above ¯v1 and ¯v∗1 represent the conjugate plural of v1 and v∗1 respectively and the other analogy. Next we will compute the coordinate to describe the center manifold C0 at γ=0 using the way of Hassard et al. [46].
We let Ut be the solution of (4.11) at at γ=0 and define
z(t)=⟨q∗,xt⟩ W(t,θ)=Ut(θ)−2Re{z(t)q(θ)}. | (4.20) |
On the center manifold C0, we can regard W(t,θ) as
W(z,ˉz,θ)=W20(θ)z22+W11(θ)zˉz+W02(θ)ˉz22+⋯. | (4.21) |
In fact, z(t) and ˉz(t) are local coordinates for center manifold C0 in the direction of q∗ and ˉq∗. It is easy to know that W(t,θ) is real only when Ut(θ) is real. We just consider it is a real solution of (4.11), and then
˙z(t)=⟨q∗,˙Ut⟩=⟨q∗,Λ0Ut+R0Ut⟩=⟨Λ∗0q∗,Ut⟩+⟨q∗,f(0,Ut)⟩=iw0τ01z+ˉq∗(0)f(0,W(z,ˉz,θ)+2Re{z(t)q(θ)})=iw0τ01z+ˉq∗(0)f0, | (4.22) |
f0=f(0,W(z,ˉz,θ)+2Re{z(t)q(θ)}), | (4.23) |
˙z(t)=iw0τ01z+g(z,ˉz), | (4.24) |
where
g(z,ˉz)=g20z22+g11zˉz+g02ˉz22+g21z2ˉz2+⋯. | (4.25) |
The following formula can be obtained from Eqs (4.21) and (4.22).
Ut=W(t,θ)+2Re{z(t)q(θ)}=W20(θ)z22+W11(θ)zˉz+W02(θ)ˉz22+zq+ˉzˉq⋯=W20(θ)z22+W11(θ)zˉz+W02(θ)ˉz22+eiw0τ01θ(1,v1,v2,v3)z+e−iw0τ01θ(1,ˉv1,ˉv2,ˉv3)ˉz+⋯. | (4.26) |
Combined with (4.23), (4.25) we have
g(z,ˉz)=¯q∗(0)f0=¯q∗(0)f(0,Ut)=ˉGτ01(1,¯v∗1,¯v∗2,¯v∗3)×(EFR0). | (4.27) |
Comparing the coefficients of (4.25) and (4.27), we obtain
g20=2τ01ˉG(12v23¯v∗1f21uue−2iw0τ01+12v23¯v∗2f3uu−12v23¯v∗1f22uu+v3¯v∗1f21uxe−2iw0τ01+v3¯v∗2f3ux−v3¯v∗1f22ux+v3v1¯v∗1f21uye−2iw0τ01+v3v1¯v∗2f3uy−v3v1¯v∗1f22uy+v2v3¯v∗1f21uze−2iw0τ01+v2v3¯v∗2f3uz−v2v3¯v∗1f22uz+12¯v∗1f21xxe−2iw0τ01+v1¯v∗1f21xye−2iw0τ01+v2¯v∗1f21xze−2iw0τ01+12v21¯v∗1f21yye−2iw0τ01+v2v1¯v∗1f21yze−2iw0τ01+12v22¯v∗1f21zze−2iw0τ01+12¯v∗2f3xx−12¯v∗1f22xx+v1¯v∗2f3xy−v1¯v∗1f22xy+v2¯v∗2f3xz−v2¯v∗1f22xz+12v21¯v∗2f3yy−12v21¯v∗1f22yy+v2v1¯v∗2f3yz−v2v1¯v∗1f22yz+12v22¯v∗2f3zz−12v22¯v∗1f22zz+12v23f1uu+v3f1ux+v3v1f1uy+v2v3f1uz+v1f1xy+v2f1xz+12v21f1yy+v2v1f1yz+12v22f1zz+f1xx2), |
g11=τ01ˉG(¯v3f1ux+v3f1ux+f1xx+¯v1f1xy+¯v2f1xz+¯v3¯v∗2f3ux+¯v∗2f3xx+¯v1¯v∗2f3xy+¯v2¯v∗2f3xz+¯v3¯v∗1f21ux+¯v∗1f21xx+¯v1¯v∗1f21xy+¯v2¯v∗1f21xz−¯v3¯v∗1f22ux−¯v∗1f22xx−¯v1¯v∗1f22xy−¯v2¯v∗1f22xz+¯v3f1uyv1+f1xyv1+¯v1f1yyv1+¯v2f1yzv1+¯v3¯v∗2f3uyv1+¯v∗2f3xyv1+¯v1¯v∗2f3yyv1+¯v2¯v∗2f3yzv1+¯v3¯v∗1f21uyv1+¯v∗1f21xyv1+¯v1¯v∗1f21yyv1+¯v2¯v∗1f21yzv1−¯v3¯v∗1f22uyv1−¯v∗1f22xyv1−¯v1¯v∗1f22yyv1−¯v2¯v∗1f22yzv1+¯v3f1uzv2+f1xzv2+¯v1f1yzv2+¯v2f1zzv2+¯v3¯v∗2f3uzv2+¯v∗2f3xzv2+¯v1¯v∗2f3yzv2+¯v2¯v∗2f3zzv2+¯v3¯v∗1f21uzv2+¯v∗1f21xzv2+¯v1¯v∗1f21yzv2+¯v2¯v∗1f21zzv2−¯v3¯v∗1f22uzv2−¯v∗1f22xzv2−¯v1¯v∗1f22yzv2−¯v2¯v∗1f22zzv2+¯v3f1uuv3+¯v1f1uyv3+¯v2f1uzv3+¯v3¯v∗2f3uuv3+¯v∗2f3uxv3+¯v1¯v∗2f3uyv3+¯v2¯v∗2f3uzv3+¯v3¯v∗1f21uuv3+¯v∗1f21uxv3+¯v1¯v∗1f21uyv3+¯v2¯v∗1f21uzv3−¯v3¯v∗1f22uuv3−¯v∗1f22uxv3−¯v1¯v∗1f22uyv3−¯v2¯v∗1f22uzv3), |
g02=2τ01ˉG(12f1yy¯v12+12¯v∗2f3yy¯v12+12e2iw0τ01¯v∗1f21yy¯v12−12¯v∗1f22yy¯v12+¯v3f1uy¯v1+f1xy¯v1+¯v2f1yz¯v1+¯v3¯v∗2f3uy¯v1+¯v∗2f3xy¯v1+¯v2¯v∗2f3yz¯v1+e2iw0τ01¯v3¯v∗1f21uy¯v1+e2iw0τ01¯v∗1f21xy¯v1+e2iw0τ01¯v2¯v∗1f21yz¯v1−¯v3¯v∗1f22uy¯v1−¯v∗1f22xy¯v1−¯v2¯v∗1f22yz¯v1+12¯v32f1uu+¯v3f1ux+¯v2¯v3f1uz+f1xx2+¯v2f1xz+12¯v22f1zz+12¯v32¯v∗2f3uu+¯v3¯v∗2f3ux+¯v2¯v3¯v∗2f3uz+12¯v∗2f3xx+¯v2¯v∗2f3xz+12¯v22¯v∗2f3zz+12e2iw0τ01¯v32¯v∗1f21uu+e2iw0τ01¯v3¯v∗1f21ux+e2iw0τ01¯v2¯v3¯v∗1f21uz+12e2iw0τ01¯v∗1f21xx+e2iw0τ01¯v2¯v∗1f21xz+12e2iw0τ01¯v22¯v∗1f21zz−12¯v32¯v∗1f22uu−¯v3¯v∗1f22ux−¯v2¯v3¯v∗1f22uz−12¯v∗1f22xx−¯v2¯v∗1f22xz−12¯v22¯v∗1f22zz), |
g21=2τ01ˉG(12W420(0)¯v3f1uu+W411(0)f1ux+W420(0)f1ux2+12W120(0)¯v3f1ux+12¯v3f1uxx+12W420(0)¯v1f1uy+12W220(0)¯v3f1uy+12W420(0)¯v2f1uz+12W320(0)¯v3f1uz+W111(0)f1xx+W120(0)f1xx2+f1xxx2+12¯v1f1xxy+12¯v2f1xxz+W211(0)f1xy+W220(0)f1xy2+12W120(0)¯v1f1xy+W311(0)f1xz+W320(0)f1xz2+12W120(0)¯v2f1xz+12W220(0)¯v1f1yy+12W320(0)¯v1f1yz+12W220(0)¯v2f1yz+12W320(0)¯v2f1zz+12W420(0)¯v3¯v∗2f3uu+W411(0)¯v∗2f3ux+12W420(0)¯v∗2f3ux+12W120(0)¯v3¯v∗2f3ux+12¯v3¯v∗2f3uxx+12W420(0)¯v1¯v∗2f3uy+12W220(0)¯v3¯v∗2f3uy+12W420(0)¯v2¯v∗2f3uz+12W320(0)¯v3¯v∗2f3uz+W111(0)¯v∗2f3xx+12W120(0)¯v∗2f3xx+12¯v∗2f3xxx+12¯v1¯v∗2f3xxy+12¯v2¯v∗2f3xxz+W211(0)¯v∗2f3xy+12W220(0)¯v∗2f3xy+12W120(0)¯v1¯v∗2f3xy+W311(0)¯v∗2f3xz+12W320(0)¯v∗2f3xz+12W120(0)¯v2¯v∗2f3xz+12W220(0)¯v1¯v∗2f3yy+12W320(0)¯v1¯v∗2f3yz+12W220(0)¯v2¯v∗2f3yz+12W320(0)¯v2¯v∗2f3zz+12eiw0τ01W420(−1)¯v3¯v∗1f21uu+e−iw0τ01W411(−1)f21ux+12eiw0τ01W420(−1)¯v∗1f21ux+12eiw0τ01W120(−1)¯v3¯v∗1f21ux+12e−iw0τ01¯v3¯v∗1f21uxx+12eiw0τ01W420(−1)¯v1¯v∗1f21uy+12eiw0τ01W220(−1)¯v3¯v∗1f21uy+12eiw0τ01W420(−1)¯v2¯v∗1f21uz+12eiw0τ01W320(−1)¯v3¯v∗1f21uz+e−iw0τ01W111(−1)¯v∗1f21xx+12eiw0τ01¯v∗1f21xx+12e−iw0τ01¯v∗1f21xxx+12e−iw0τ01¯v1¯v∗1f21xxy+12e−iw0τ01¯v2¯v∗1f21xxz+e−iw0τ01W211(−1)¯v∗1f21xy+12eiw0τ01W220(−1)¯v∗1f21xy+12eiw0τ01W120(−1)¯v1¯v∗1f21xy+e−iw0τ01W311(−1)¯v∗1f21xz+12eiw0τ01W320(−1)¯v∗1f21xz+12eiw0τ01W120(−1)¯v2f21xz+12eiw0τ01W220(−1)¯v1¯v∗1f21yy+12eiw0τ01W320(−1)¯v1¯v∗1f21yz+12eiw0τ01W220(−1)¯v2¯v∗1f21yz+12eiw0τ01W320(−1)¯v2¯v∗1f21zz−12W420(0)¯v3¯v∗1f22uu−W411(0)¯v∗1f22ux−12W420(0)¯v∗1f22ux−12W120(0)¯v3¯v∗1f22ux−12¯v3¯v∗1f22uxx−12W420(0)¯v1¯v∗1f22uy−12W220(0)¯v3¯v∗1f22uy−12W420(0)¯v2¯v∗1f22uz−12W320(0)¯v3¯v∗1f22uz−W111(0)¯v∗1f22xx−12W120(0)¯v∗1f22xx−12¯v∗1f22xxx−12¯v1¯v∗1f22xxy−12¯v2¯v∗1f22xxz−W211(0)¯v∗1f22xy−12W220(0)¯v∗1f22xy−12W120(0)¯v1¯v∗1f22xy−W311(0)¯v∗1f22xz−12W320(0)¯v∗1f22xz−12W120(0)¯v2¯v∗1f22xz−12W220(0)¯v1¯v∗1f22yy−12W320(0)¯v1¯v∗1f22yz−12W220(0)¯v2¯v∗1f22yz−12W320(0)¯v2¯v∗1f22zz+12¯v3f1uyyv21+12f1xyyv21+12¯v1f1yyyv21+12¯v2f1yyzv21+12¯v3¯v∗2f3uyyv21+12¯v∗2f3xyyv21+12¯v1¯v∗2f3yyyv21+12¯v2¯v∗2f3yyzv21+12e−iw0τ01¯v3¯v∗1f21uyyv21+12e−iw0τ01¯v∗1f21xyyv21+12e−iw0τ01¯v1¯v∗1f21yyyv21+12e−iw0τ01¯v2¯v∗1f21yyzv21−12¯v3¯v∗1f22uyyv21−12¯v∗1f22xyyv21−12¯v1¯v∗1f22yyyv21−12¯v2¯v∗1f22yyzv21+¯v3f1uxyv1+W411(0)f1uyv1+f1xxyv1+W111(0)f1xyv1+¯v1f1xyyv1+¯v2f1xyzv1+W211(0)f1yyv1+W311(0)f1yzv1+¯v3¯v∗2f3uxyv1+W411(0)¯v∗2f3uyv1+¯v∗2f3xxyv1+W111(0)¯v∗2f3xyv1+¯v1¯v∗2f3xyyv1+¯v2¯v∗2f3xyzv1+W211(0)¯v∗2f3yyv1+W311(0)¯v∗2f3yzv1+e−iw0τ01¯v3¯v∗1f21uxyv1+e−iw0τ01W411(−1)¯v∗1f21uyv1+e−iw0τ01¯v∗1f21xxyv1+e−iw0τ01W111(−1)¯v∗1f21xyv1+e−iw0τ01¯v1¯v∗1f21xyyv1+e−iw0τ01¯v2¯v∗1f21xyzv1+e−iw0τ01W211(−1)¯v∗1f21yyv1+e−iw0τ01W311(−1)¯v∗1f21yzv1−¯v3¯v∗1f22uxyv1−W411(0)¯v∗1f22uyv1−¯v∗1f22xxyv1−W111(0)¯v∗1f22xyv1−¯v1¯v∗1f22xyyv1−¯v2¯v∗1f22xyzv1−W211(0)¯v∗1f22yyv1−W311(0)¯v∗1f22yzv1+¯v3f1uyzv2v1+f1xyzv2v1+¯v1f1yyzv2v1+¯v2f1yzzv2v1+¯v3¯v∗2f3uyzv2v1+¯v∗2f3xyzv2v1+¯v1¯v∗2f3yyzv2v1+¯v2¯v∗2f3yzzv2v1+e−iw0τ01¯v3¯v∗1f21uyzv2v1+e−iw0τ01¯v∗1f21xyzv2v1+e−iw0τ01¯v1¯v∗1f21yyzv2v1+e−iw0τ01¯v2¯v∗1f21yzzv2v1−¯v3¯v∗1f22uyzv2v1−¯v∗1f22xyzv2v1−¯v1¯v∗1f22yyzv2v1−¯v2¯v∗1f22yzzv2v1+¯v3f1uuyv3v1+f1uxyv3v1+¯v1f1uyyv3v1+¯v2f1uyzv3v1+¯v3¯v∗2f3uuyv3v1+¯v∗2f3uxyv3v1+¯v1¯v∗2f3uyyv3v1+¯v2¯v∗2f3uyzv3v1+e−iw0τ01¯v3¯v∗1f21uuyv3v1+e−iw0τ01¯v∗1f21uxyv3v1+e−iw0τ01¯v1¯v∗1f21uyyv3v1+e−iw0τ01¯v2¯v∗1f21uyzv3v1−¯v3¯v∗1f22uuyv3v1−¯v∗1f22uxyv3v1−¯v1¯v∗1f22uyyv3v1−¯v2¯v∗1f22uyzv3v1+12¯v3f1uzzv22+12f1xzzv22+12¯v1f1yzzv22+12¯v2f1zzzv22+12¯v3¯v∗2f3uzzv22+12¯v∗2f3xzzv22+12¯v1¯v∗2f3yzzv22+12¯v2¯v∗2f3zzzv22+12e−iw0τ01¯v3¯v∗1f21uzzv22+12e−iw0τ01¯v∗1f21xzzv22+12e−iw0τ01¯v1¯v∗1f21yzzv22+12e−iw0τ01¯v2¯v∗1f21zzzv22−12¯v3¯v∗1f22uzzv22−12¯v∗1f22xzzv22−12¯v1¯v∗1f22yzzv22−12¯v2¯v∗1f22zzzv22+12¯v3f1uuuv23+12f1uuxv23+12¯v1f1uuyv23+12¯v2f1uuzv23+12¯v3¯v∗2f3uuuv23+12¯v∗2f3uuxv23+12¯v1¯v∗2f3uuyv23+12¯v2¯v∗2f3uuzv23+12e−iw0τ01¯v3¯v∗1f21uuuv23+12e−iw0τ01¯v∗1f21uuxv23+12e−iw0τ01¯v1¯v∗1f21uuyv23+12e−iw0τ01¯v2¯v∗1f21uuzv23−12¯v3¯v∗1f22uuuv23−12¯v∗1f22uuxv23−12¯v1¯v∗1f22uuyv23−12¯v2¯v∗1f22uuzv23+W411(0)f1uzv2+f1xxzv2+¯v1f1xyzv2+W111(0)f1xzv2+¯v2f1xzzv2+W211(0)f1yzv2+W311(0)f1zzv2+W411(0)¯v∗2f3uzv2+¯v∗2f3xxzv2+¯v1¯v∗2f3xyzv2+W111(0)¯v∗2f3xzv2+¯v2¯v∗2f3xzzv2+W211(0)¯v∗2f3yzv2+W311(0)¯v∗2f3zzv2+e−iw0τ01¯v3¯v∗1f21uxzv2+e−iw0τ01W411(−1)¯v∗1f21uzv2+e−iw0τ01¯v∗1f21xxzv2+e−iw0τ01¯v1¯v∗1f21xyzv2+e−iw0τ01W111(−1)¯v∗1f21xzv2+e−iw0τ01¯v2¯v∗1f21xzzv2+e−iw0τ01W211(−1)¯v∗1f21yzv2+e−iw0τ01W311(−1)¯v∗1f21zzv2−W411(0)¯v∗1f22uzv2−¯v∗1f22xxzv2−¯v1¯v∗1f22xyzv2−W111(0)¯v∗1f22xzv2−¯v2¯v∗1f22xzzv2−W211(0)¯v∗1f22yzv2−W311(0)¯v∗1f22zzv2+W411(0)f1uuv3+¯v3f1uuxv3+W111(0)f1uxv3+f1uxxv3+¯v1f1uxyv3+W211(0)f1uyv3+W311(0)f1uzv3+W411(0)¯v∗2f3uuv3+¯v3¯v∗2f3uuxv3+W111(0)¯v∗2f3uxv3+¯v∗2f3uxxv3+¯v1¯v∗2f3uxyv3+W211(0)¯v∗2f3uyv3+W311(0)¯v∗2f3uzv3+e−iw0τ01W411(−1)¯v∗1f21uuv3+e−iw0τ01¯v3¯v∗1f21uuxv3+e−iw0τ01W111(−1)¯v∗1f21uxv3+e−iw0τ01¯v∗1f21uxxv3+e−iw0τ01¯v1¯v∗1f21uxyv3+e−iw0τ01¯v2¯v∗1f21uxzv3+e−iw0τ01W211(−1)¯v∗1f21uyv3+e−iw0τ01W311(−1)¯v∗1f21uzv3−W411(0)¯v∗1f22uuv3−¯v3¯v∗1f22uuxv3−W111(0)¯v∗1f22uxv3−¯v∗1f22uxxv3−¯v1¯v∗1f22uxyv3−W211(0)¯v∗1f22uyv3−W311(0)¯v∗1f22uzv3+¯v3f1uuzv2v3+¯v1f1uyzv2v3+¯v2f1uzzv2v3+¯v3¯v∗2f3uuzv2v3+¯v1¯v∗2f3uyzv2v3+¯v2¯v∗2f3uzzv2v3+e−iw0τ01¯v3¯v∗1f21uuzv2v3+e−iw0τ01¯v∗1f21uxzv2v3+e−iw0τ01¯v1¯v∗1f21uyzv2v3+e−iw0τ01¯v2¯v∗1f21uzzv2v3−¯v3¯v∗1f22uuzv2v3−¯v1¯v∗1f22uyzv2v3−¯v2¯v∗1f22uzzv2v3). |
Since W20(θ) and W11(θ) are unknown in g21, we will continue to solve for W20(θ) and W11(θ). From (4.17) and (4.21) we have
˙W=˙Ut−˙z(t)q(θ)−˙ˉzˉq(θ)=Λ0Ut+R0Ut−[iw0τ01z(t)+ˉq∗(0)f0(z,ˉz)]q(θ)−[−iw0τ01z(t)+q∗(0)ˉf0(z,ˉz)]ˉq(θ)={Λ0W−2ℜ(ˉq∗(0)q(θ)f0(z,ˉz)),θ∈[−1,0)Λ0W−2ℜ(ˉq∗(0)q(θ)f0(z,ˉzq(θ))+f0,θ=0=Λ0W+H(z,ˉz,θ), | (4.28) |
where
H(z,ˉz,θ)=H20(θ)z22+H11(θ)zˉz+H02(θ)ˉz22+⋯. | (4.29) |
Differentiating formula (4.21) for t we can have
˙W=Wz˙z+Wˉz˙ˉz=(W20(θ)z+W11(θ)ˉz⋯)(iw0τ01z+g(z,ˉz))+(W11(θ)z+W02(θ)ˉz⋯)(−iw0τ01ˉz+ˉg(z,ˉz)). | (4.30) |
Bring (4.22) and (4.20) into (4.30), we obtain
˙W=Λ0(W20(θ)z22+W11(θ)zˉz+W02(θ)ˉz22+⋯)+H20(θ)z22+H11(θ)zˉz+H02(θ)ˉz22+⋯=(Λ0W20(θ)+H20(θ))z22+(Λ0W11(θ)+H11(θ))zˉz+(Λ0W02(θ)+H02(θ))ˉz22+⋯. | (4.31) |
Compare the coefficients of z2 and zˉz in (4.30) and (4.31) to obtain the following equation
(Λ0−2iw0τ01I)W20(θ)=−H20(θ), | (4.32) |
and
Λ0W11(θ)=−H11(θ), | (4.33) |
where I is a identity matrix.
H(z,ˉz,θ)=−ˉq∗(0)f0q(θ)−q∗(0)ˉf0ˉq(θ)=−g(z,ˉz)q(θ)−ˉg(z,ˉz)ˉq(θ)=−(g20z22+g11zˉz+g02ˉz22+⋯)q(θ)−(ˉg20ˉz22+ˉg11zˉz+ˉg02z22+⋯)ˉq(θ), | (4.34) |
for θ∈[−1,0).
Comparing the corresponding coefficients of (4.29)and (4.34), we can get the following equation
H20(θ)=−g20q(θ)−ˉg02ˉq(θ), | (4.35) |
H11(θ)=−g11q(θ)−ˉg11ˉq(θ). | (4.36) |
From (4.33) we can obtain
Λ0W20(θ)=2iw0τ01W20(θ)−H20(θ). | (4.37) |
According the definition of Λ0, q(θ)=q(0)eiw0τ01θ and combining (4.35), (4.37) then
˙W20(θ)=2iw0τ01W20(θ)+g20q(0)eiw0τ01θ+ˉg02ˉq(0)e−iw0τ01θ, | (4.38) |
W20(θ)=ig20w0τ01q(0)eiw0τ01θ+iˉg023w0τ01ˉq(0)e−iw0τ01θ+N1e2iw0τ01θ, | (4.39) |
where N1=(N(1)1,N(2)1,N(3)1,N(4)1)T is a constant vector.
Similarly, we can get
˙W11(θ)=g11q(0)eiw0τ01θ+ˉg11ˉq(0)e−iw0τ01θ,W11(θ)=−ig11w0τ01q(0)eiw0τ01θ+iˉg11w0τ01ˉq(0)e−iw0τ01θ+N2, | (4.40) |
where, N2=(N(1)2,N(2)2,N(3)2,N(4)2)T is also a constant vector. Next we just need to calculate N1 and N2. From (4.33), (4.34) and the define of Λ0 the following equations can be exported.
H20(0)=−g20q(0)−ˉg02ˉq(0)+2τ01(12v23f1uu+v3f1ux+v3v1f1uy+v2v3f1uz+v1f1xy+v2f1xz+12v21f1yy+v2v1f1yz+12v22f1zz+f1xx2v1f21xye−2iw0τ01+v2f21xze−2iw0τ01+12v21f21yye−2iw0τ01−v1f22xy−v2f22xz−12v21f22yy+12f21xxe−2iw0τ01−f22xx2+v3f21uxe−2iw0τ01−v3f22ux+v1v3f21uye−2iw0τ01+v1v2f21yze−2iw0τ01+12v22f21zze−2iw0τ01−v1v2f22yz−12v22f22zz+12v23f21uue−2iw0τ01−12v23f22uu−v1v3f22uy+v2v3f21uze−2iw0τ01−v2v3f22uz12v23f3uu+v3f3ux+v3v1f3uy+v2v3f3uz+v1f3xy+v2f3xz+12v21f3yy+v2v1f3yz+12v22f3zz+f3xx20). | (4.41) |
H11(0)=−g11q(0)−ˉg11ˉq(0)+τ01(¯v3f1ux+v1¯v3f1uy+v2¯v3f1uz+¯v1f1xy+¯v2f1xz+v1¯v1f1yy+v1¯v2f1yz+v2¯v1f1yz+v1f1xy+v2f1xz+f1xx+v3¯v3f1uu+v3¯v1f1uy+v3¯v2f1uz+v2+¯v2f1zz+v3f1ux¯v3f21ux−¯v3f22ux+v1¯v3f21uy+¯v1f21xy−¯v1f22xy+¯v2f21xz−¯v2f22xz+v1¯v1f21yy+v1f21xy+f21xx−f22xx+−v1¯v3f22uy+v2¯v3f21uz−v1¯v1f22yy+v1+¯v2f21yz−v1¯v2f22yz+v2¯v1f21yz−v1f22xy+v2f21xz+v3¯v3f21uu−v3¯v3f22uu+v3¯v1f21uy−v2¯v3f22uz+v3¯v2f21uz−v2¯v1f22yz+v2+¯v2f21zz−v2¯v2f22zz+v3f21ux−v2f22xz−v3¯v1f22uy−v3¯v2f22uz+v3(−f22ux)¯v3f3ux+v1¯v3f3uy+v2¯v3f3uz+¯v1f3xy+¯v2f3xz+v1¯v1f3yy+v1¯v2f3yz+v2¯v1f3yz+v2¯v2f3zz+v1f3xy+v2f3xz+f3xx+v3+¯v3f3uu+v3¯v1f3uy+v3¯v2f3uz+v3f3ux0). | (4.42) |
Since iω0τ0 is the eigenvalue of A(0) and q(0)is the corresponding eigenvector, there is
(iω0τ0I−∫0−1eiω0τ0θdη(θ))q(0)=0, | (4.43) |
and
(−iω0τ0I−∫0−1e−iω0τ0θdη(θ))ˉq(0)=0. | (4.44) |
So, we can get
(2iw0−f1x−f1y−f1z−f1u02iw0+f22yf22zf22u−f3x02iw0−f3z−f3u0002iw0+Da0+Eto⋅Sea)×N1=2(12v23f1uu+v3f1ux+v3v1f1uy+v2v3f1uz+v1f1xy+v2f1xz+12v21f1yy+v2v1f1yz+12v22f1zz+f1xx2v1f21xye−2iw0τ01+v2f21xze−2iw0τ01+12v21f21yye−2iw0τ01−v1f22xy−v2f22xz−12v21f22yy+12f21xxe−2iw0τ01−f22xx2+v3f21uxe−2iw0τ01−v3f22ux+v1v3f21uye−2iw0τ01+v1v2f21yze−2iw0τ01+12v22f21zze−2iw0τ01−v1v2f22yz−12v22f22zz+12v23f21uue−2iw0τ01−12v23f22uu−v1v3f22uy+v2v3f21uze−2iw0τ01−v2v3f22uz12v23f3uu+v3f3ux+v3v1f3uy+v2v3f3uz+v1f3xy+v2f3xz+12v21f3yy+v2v1f3yz+12v22f3zz+f3xx20), | (4.45) |
and
(−f1x−f1y−f1z−f1u0f22yf22zf22u−f3x0−f3z−f3u000Da0+Eto⋅Sea)×N2=(¯v3f1ux+v1¯v3f1uy+v2¯v3f1uz+¯v1f1xy+¯v2f1xz+v1¯v1f1yy+v1¯v2f1yz+v2¯v1f1yz+v1f1xy+v2f1xz+f1xx+v3¯v3f1uu+v3¯v1f1uy+v3¯v2f1uz+v2+¯v2f1zz+v3f1ux¯v3f21ux−¯v3f22ux+v1¯v3f21uy+¯v1f21xy−¯v1f22xy+¯v2f21xz−¯v2f22xz+v1¯v1f21yy+v1f21xy+f21xx−f22xx+−v1¯v3f22uy+v2¯v3f21uz−v1¯v1f22yy+v1+¯v2f21yz−v1¯v2f22yz+v2¯v1f21yz−v1f22xy+v2f21xz+v3¯v3f21uu−v3¯v3f22uu+v3¯v1f21uy−v2¯v3f22uz+v3¯v2f21uz−v2¯v1f22yz+v2+¯v2f21zz−v2¯v2f22zz+v3f21ux−v2f22xz−v3¯v1f22uy−v3¯v2f22uz+v3(−f22ux)¯v3f3ux+v1¯v3f3uy+v2¯v3f3uz+¯v1f3xy+¯v2f3xz+v1¯v1f3yy+v1¯v2f3yz+v2¯v1f3yz+v2¯v2f3zz+v1f3xy+v2f3xz+f3xx+v3+¯v3f3uu+v3¯v1f3uy+v3¯v2f3uz+v3f3ux0). | (4.46) |
Finally, according to the definition of η(θ), we can solve N1, N2 and g21. Besides we can also get the following values
C1(0)=i2w0τ01(g11g20−2|g11|2−|g02|23)+g212,μ2=−Re{C1(0)}Re{λ′(τ01)},T2=−Im{C1(0)}+μ2Im{λ′(τ01)}w0τ01,β2=2Re{C1(0)}. |
From the above discussion we can get the following results:
(1) The direction of Hopf bifurcation is determined by μ2 : if μ2>0 (μ2<0), then the Hopf bifurcation is supercritical (subcritical) and the bifurcating periodic solutions exist for τ>τ01 (τ<τ01);
(2) The stability of the bifurcating periodic solutions is depended on β2, the bifurcating periodic solutions in the center manifold are stable (unstable) for β2<0 (β2>0);
(3) The period of the bifurcating periodic solutions is determined by T2 :the period increases if T2>0 (decreases T2<0).
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Parameter | Description | value | Reference |
kp0 | Basal production rate of p53 | 1.3396/h | [33] |
km0 | Basal production rate of Mdm2 | 0.08/h | [33] |
kw0 | Basal production rate of Wip1 | 0.105/h | [33] |
kpm | Rate constant of p53p-induced production of Mdm2 | 0.9172/h | [33] |
kpw | Rate constant of p53p-induced production of Wip1 | 0.1496/h | [33] |
n1 | Hill coefficient of p53p-induced production of Mdm2 | 4 | [33] |
n2 | Hill coefficient of p53p-induced production of Wip1 | 4 | [33] |
Kpm0 | Michaelis constant for p53p-induced production of Mdm2 | 0.4025 | [33] |
Kpw0 | Michaelis constant for p53p-induced production of Wip1 | 0.4025 | [33] |
kmp0 | Rate constant of Mdm2-induced degradation of p53u | 4.038/h | [33] |
γp | Mdm2-independent degradation rate constant of p53 | 0.1/h | [33] |
γm0 | Degradation rate constant of Mdm2u | 0.2579/h | [33] |
γm1 | Degradation rate constant of Mdm2p | 7.7362/h | [33] |
γw | Degradation rate constant of Wip1 | 0.4 | [33] |
Sea | Rate constant of etoposide-induced phosphorylation of ATM | 1/μMh | [33] |
Da0 | Rate constant of dephosphorylation of ATM | 80/h | [14] |
Sp0 | Rate constant of ATM-independent phosphorylation of p53 | 0.25 | [33] |
Sap | Rate constant of ATM-mediated phosphorylation of p53 | 0.8335/h | [33] |
Dp0 | Rate constant of Wip1-independent dephosphorylation of p53 | 0.75/h | [33] |
Dwp | Rate constant of Wip1-mediated dephosphorylation of p53 | 0.25/h | [33] |
Sm0 | Rate constant of ATM-independent phosphorylation of Mdm2 | 0.0153/h | [33] |
Sam | Rate constant of ATM-mediated phosphorylation of Mdm2 | 0.283 | [33] |
Dm0 | Rate constant of Wip1-independent dephosphorylation of Mdm2 | 0.5/h | [33] |
Dwm | Rate constant of Wip1-mediated dephosphorylation of Mdm2 | 0.5/h | [33] |
ATMt | Total amount of ATM | 16 | [33] |
τ1 | Time delay in production of Mdm2 | 0.5–3/h | Estimated |
τ2 | Time delay in production of Wip1 | 0.5–3/h | Estimated |
Parameter | Description | value | Reference |
kp0 | Basal production rate of p53 | 2.4138/h | [33] |
km0 | Basal production rate of Mdm2 | 0.2/h | [33] |
kw0 | Basal production rate of Wip1 | 0.35/h | [33] |
kpm | Rate constant of p53p-induced production of Mdm2 | 2.3854/h | [33] |
kpw | Rate constant of p53p-induced production of Wip1 | 0.8702/h | [33] |
n1 | Hill coefficient of p53p-induced production of Mdm2 | 4 | [33] |
n2 | Hill coefficient of p53p-induced production of Wip1 | 4 | [33] |
Kpm0 | Michaelis constant for p53p-induced production of Mdm2 | 0.4025 | [33] |
Kpw0 | Michaelis constant for p53p-induced production of Wip1 | 0.4025 | [33] |
kmp0 | Rate constant of Mdm2-induced degradation of p53u | 2.7048/h | [33] |
γp | Mdm2-independent degradation rate constant of p53 | 0.25/h | [33] |
γm0 | Degradation rate constant of Mdm2u | 0.1804/h | [33] |
γm1 | Degradation rate constant of Mdm2p | 3.6088/h | [33] |
γw | Degradation rate constant of Wip1 | 0.4 | [33] |
Sea | Rate constant of etoposide-induced phosphorylation of ATM | 1/μMh | [33] |
Da0 | Rate constant of dephosphorylation of ATM | 30/h | [14] |
Sp0 | Rate constant of ATM-independent phosphorylation of p53 | 0.25 | [33] |
Sap | Rate constant of ATM-mediated phosphorylation of p53 | 0.4335/h | [33] |
Dp0 | Rate constant of Wip1-independent dephosphorylation of p53 | 0.75/h | [33] |
Dwp | Rate constant of Wip1-mediated dephosphorylation of p53 | 0.25/h | [33] |
Sm0 | Rate constant of ATM-independent phosphorylation of Mdm2 | 0.0479/h | [33] |
Sam | Rate constant of ATM-mediated phosphorylation of Mdm2 | 0.2830 | [33] |
Dm0 | Rate constant of Wip1-independent dephosphorylation of Mdm2 | 0.5/h | [33] |
Dwm | Rate constant of Wip1-mediated dephosphorylation of Mdm2 | 0.5/h | [33] |
ATMt | Total amount of ATM | 3.5 | [33] |
τ1 | Time delay in production of Mdm2 | 0.5–3/h | Estimated |
τ2 | Time delay in production of Wip1 | 0.5–3/h | Estimated |
Parameter | Description | value | Reference |
kp0 | Basal production rate of p53 | 1.3396/h | [33] |
km0 | Basal production rate of Mdm2 | 0.08/h | [33] |
kw0 | Basal production rate of Wip1 | 0.105/h | [33] |
kpm | Rate constant of p53p-induced production of Mdm2 | 0.9172/h | [33] |
kpw | Rate constant of p53p-induced production of Wip1 | 0.1496/h | [33] |
n1 | Hill coefficient of p53p-induced production of Mdm2 | 4 | [33] |
n2 | Hill coefficient of p53p-induced production of Wip1 | 4 | [33] |
Kpm0 | Michaelis constant for p53p-induced production of Mdm2 | 0.4025 | [33] |
Kpw0 | Michaelis constant for p53p-induced production of Wip1 | 0.4025 | [33] |
kmp0 | Rate constant of Mdm2-induced degradation of p53u | 4.038/h | [33] |
γp | Mdm2-independent degradation rate constant of p53 | 0.1/h | [33] |
γm0 | Degradation rate constant of Mdm2u | 0.2579/h | [33] |
γm1 | Degradation rate constant of Mdm2p | 7.7362/h | [33] |
γw | Degradation rate constant of Wip1 | 0.4 | [33] |
Sea | Rate constant of etoposide-induced phosphorylation of ATM | 1/μMh | [33] |
Da0 | Rate constant of dephosphorylation of ATM | 80/h | [14] |
Sp0 | Rate constant of ATM-independent phosphorylation of p53 | 0.25 | [33] |
Sap | Rate constant of ATM-mediated phosphorylation of p53 | 0.8335/h | [33] |
Dp0 | Rate constant of Wip1-independent dephosphorylation of p53 | 0.75/h | [33] |
Dwp | Rate constant of Wip1-mediated dephosphorylation of p53 | 0.25/h | [33] |
Sm0 | Rate constant of ATM-independent phosphorylation of Mdm2 | 0.0153/h | [33] |
Sam | Rate constant of ATM-mediated phosphorylation of Mdm2 | 0.283 | [33] |
Dm0 | Rate constant of Wip1-independent dephosphorylation of Mdm2 | 0.5/h | [33] |
Dwm | Rate constant of Wip1-mediated dephosphorylation of Mdm2 | 0.5/h | [33] |
ATMt | Total amount of ATM | 16 | [33] |
τ1 | Time delay in production of Mdm2 | 0.5–3/h | Estimated |
τ2 | Time delay in production of Wip1 | 0.5–3/h | Estimated |
Parameter | Description | value | Reference |
kp0 | Basal production rate of p53 | 2.4138/h | [33] |
km0 | Basal production rate of Mdm2 | 0.2/h | [33] |
kw0 | Basal production rate of Wip1 | 0.35/h | [33] |
kpm | Rate constant of p53p-induced production of Mdm2 | 2.3854/h | [33] |
kpw | Rate constant of p53p-induced production of Wip1 | 0.8702/h | [33] |
n1 | Hill coefficient of p53p-induced production of Mdm2 | 4 | [33] |
n2 | Hill coefficient of p53p-induced production of Wip1 | 4 | [33] |
Kpm0 | Michaelis constant for p53p-induced production of Mdm2 | 0.4025 | [33] |
Kpw0 | Michaelis constant for p53p-induced production of Wip1 | 0.4025 | [33] |
kmp0 | Rate constant of Mdm2-induced degradation of p53u | 2.7048/h | [33] |
γp | Mdm2-independent degradation rate constant of p53 | 0.25/h | [33] |
γm0 | Degradation rate constant of Mdm2u | 0.1804/h | [33] |
γm1 | Degradation rate constant of Mdm2p | 3.6088/h | [33] |
γw | Degradation rate constant of Wip1 | 0.4 | [33] |
Sea | Rate constant of etoposide-induced phosphorylation of ATM | 1/μMh | [33] |
Da0 | Rate constant of dephosphorylation of ATM | 30/h | [14] |
Sp0 | Rate constant of ATM-independent phosphorylation of p53 | 0.25 | [33] |
Sap | Rate constant of ATM-mediated phosphorylation of p53 | 0.4335/h | [33] |
Dp0 | Rate constant of Wip1-independent dephosphorylation of p53 | 0.75/h | [33] |
Dwp | Rate constant of Wip1-mediated dephosphorylation of p53 | 0.25/h | [33] |
Sm0 | Rate constant of ATM-independent phosphorylation of Mdm2 | 0.0479/h | [33] |
Sam | Rate constant of ATM-mediated phosphorylation of Mdm2 | 0.2830 | [33] |
Dm0 | Rate constant of Wip1-independent dephosphorylation of Mdm2 | 0.5/h | [33] |
Dwm | Rate constant of Wip1-mediated dephosphorylation of Mdm2 | 0.5/h | [33] |
ATMt | Total amount of ATM | 3.5 | [33] |
τ1 | Time delay in production of Mdm2 | 0.5–3/h | Estimated |
τ2 | Time delay in production of Wip1 | 0.5–3/h | Estimated |