Pressure in arteries is difficult to measure non-invasively. Although computational fluid dynamics (CFD) provides high-precision numerical solutions according to the basic physical equations of fluid mechanics, it relies on precise boundary conditions and complex preprocessing, which limits its real-time application. Machine learning algorithms have wide applications in hemodynamic research due to their powerful learning ability and fast calculation speed. Therefore, we proposed a novel method for pressure estimation based on physics-informed neural network (PINN). An ideal aortic arch model was established according to the geometric parameters from human aorta, and we performed CFD simulation with two-way fluid-solid coupling. The simulation results, including the space-time coordinates, the velocity and pressure field, were obtained as the dataset for the training and validation of PINN. Nondimensional Navier-Stokes equations and continuity equation were employed for the loss function of PINN, to calculate the velocity and relative pressure field. Post-processing was proposed to fit the absolute pressure of the aorta according to the linear relationship between relative pressure, elastic modulus and displacement of the vessel wall. Additionally, we explored the sensitivity of the PINN to the vascular elasticity, blood viscosity and blood velocity. The velocity and pressure field predicted by PINN yielded good consistency with the simulated values. In the interested region of the aorta, the relative errors of maximum and average absolute pressure were 7.33% and 5.71%, respectively. The relative pressure field was found most sensitive to blood velocity, followed by blood viscosity and vascular elasticity. This study has proposed a method for intra-vascular pressure estimation, which has potential significance in the diagnosis of cardiovascular diseases.
Citation: Meiyuan Du, Chi Zhang, Sheng Xie, Fang Pu, Da Zhang, Deyu Li. Investigation on aortic hemodynamics based on physics-informed neural network[J]. Mathematical Biosciences and Engineering, 2023, 20(7): 11545-11567. doi: 10.3934/mbe.2023512
Pressure in arteries is difficult to measure non-invasively. Although computational fluid dynamics (CFD) provides high-precision numerical solutions according to the basic physical equations of fluid mechanics, it relies on precise boundary conditions and complex preprocessing, which limits its real-time application. Machine learning algorithms have wide applications in hemodynamic research due to their powerful learning ability and fast calculation speed. Therefore, we proposed a novel method for pressure estimation based on physics-informed neural network (PINN). An ideal aortic arch model was established according to the geometric parameters from human aorta, and we performed CFD simulation with two-way fluid-solid coupling. The simulation results, including the space-time coordinates, the velocity and pressure field, were obtained as the dataset for the training and validation of PINN. Nondimensional Navier-Stokes equations and continuity equation were employed for the loss function of PINN, to calculate the velocity and relative pressure field. Post-processing was proposed to fit the absolute pressure of the aorta according to the linear relationship between relative pressure, elastic modulus and displacement of the vessel wall. Additionally, we explored the sensitivity of the PINN to the vascular elasticity, blood viscosity and blood velocity. The velocity and pressure field predicted by PINN yielded good consistency with the simulated values. In the interested region of the aorta, the relative errors of maximum and average absolute pressure were 7.33% and 5.71%, respectively. The relative pressure field was found most sensitive to blood velocity, followed by blood viscosity and vascular elasticity. This study has proposed a method for intra-vascular pressure estimation, which has potential significance in the diagnosis of cardiovascular diseases.
[1] | M. Kadem, L. Garber, M. Abdelkhalek, B. K. Al-Khazraji, Z. Keshavarz-Motamed, Hemodynamic modeling, medical imaging, and machine learning and their applications to cardiovascular interventions, IEEE Rev. Biomed. Eng., 16 (2023), 403–423. https://doi.org/10.1109/RBME.2022.3142058 doi: 10.1109/RBME.2022.3142058 |
[2] | M. F. O'Rourke, A. Adji, W. W. Nichols, C. Vlachopoulos, E. R. Edelman, Application of arterial hemodynamics to clinical practice: a testament to medical science in London, Artery Res., 18 (2017), 81–86. https://doi.org/10.1016/j.artres.2017.03.003 doi: 10.1016/j.artres.2017.03.003 |
[3] | K. Chatterjee, The swan-ganz catheters: past, present, and future: a viewpoint, Circulation, 119 (2009), E548. https://doi.org/10.1161/CIRCULATIONAHA.109.192583 doi: 10.1161/CIRCULATIONAHA.109.192583 |
[4] | R. Kett-White, P. J. Hutchinson, P. G. Al-Rawi, A. K. Gupta, J. D. Pickard, P. J. Kirkpatrick, Adverse cerebral events detected after subarachnoid hemorrhage using brain oxygen and microdialysis probes, Neurosurgery, 50 (2002), 1212–1221. https://doi.org/10.1097/00006123-200206000-00008 doi: 10.1097/00006123-200206000-00008 |
[5] | P. van Ooij, W. V. Potters, J. Collins, M. Carr, J. Carr, S. C. Malasrie, et al., Characterization of abnormal wall shear stress using 4D flow MRI in human bicuspid aortopathy, Ann. Biomed. Eng., 43 (2015), 1385–1397. https://doi.org/10.1007/s10439-014-1092-7 doi: 10.1007/s10439-014-1092-7 |
[6] | Y. Qin, J. H. Wu, Q. M. Hu, D. N. Ghista, K. K. L. Wong, Computational evaluation of smoothed particle hydrodynamics for implementing blood flow modelling through CT reconstructed arteries, J. X-ray Sci. Technol., 25 (2017), 213–232. https://doi.org/10.3233/XST-17255 doi: 10.3233/XST-17255 |
[7] | V. M. Pereira, B. Delattre, O. Brina, P. Bouillot, M. I. Vargas, 4D flow MRI in neuroradiology: techniques and applications, Top. Magn. Reson. Imaging, 25 (2016), 81–87. https://doi.org/10.1097/RMR.0000000000000082 doi: 10.1097/RMR.0000000000000082 |
[8] | K. Y. Lin, T. C. Shih, S. H. Chou, Z. Y. Chen, C. H. Hsu, C. Y. Ho, Computational fluid dynamics with application of different theoretical flow models for the evaluation of coronary artery stenosis on ct angiography: Comparison with invasive fractional flow reserve, Biomed. Phys. Eng. Express, 2 (2016), 065011. https://doi.org/10.1088/2057-1976/2/6/065011 doi: 10.1088/2057-1976/2/6/065011 |
[9] | A. Dubey, B. Vasu, O. Anwar Beg, R. S. R. Gorla, A. Kadir, Computational fluid dynamic simulation of two-fluid non-newtonian nanohemodynamics through a diseased artery with a stenosis and aneurysm, Comput. Methods Biomech. Biomed. Eng., 23 (2020), 345–371. https://doi.org/10.1080/10255842.2020.1729755 doi: 10.1080/10255842.2020.1729755 |
[10] | E. C. Mason, S. McGhee, K. Zhao, T. Chiang, L. Matrka, The application of computational fluid dynamics in the evaluation of Laryngotracheal Pathology, Ann. Otol. Rhinol. Laryngol., 128 (2019), 453–459. https://doi.org/10.1177/0003489419826601 doi: 10.1177/0003489419826601 |
[11] | C. Zhang, B. Lin, D. Li, Y. Fan, Application of multiscale coupling models in the numerical study of circulation system, Med. Novel Technol. Devices, 14 (2022), 100117. https://doi.org/10.1016/j.medntd.2022.100117 doi: 10.1016/j.medntd.2022.100117 |
[12] | L. Liang, M. Liu, C. Martin, W. Sun, A deep learning approach to estimate stress distribution: a fast and accurate surrogate of finite-element analysis, J. R. Soc. Intrface, 15 (2018), 20170844. https://doi.org/10.1098/rsif.2017.0844 doi: 10.1098/rsif.2017.0844 |
[13] | G. Hajgato, B. Gyires-Toth, G. Paal, Accelerating convergence of fluid dynamics simulations with convolutional neural networks, Period. Polytech. Mech. Eng., 63 (2019), 230–239. https://doi.org/10.1098/rsif.2017.0844 doi: 10.1098/rsif.2017.0844 |
[14] | G. Y. Li, H. R. Wang, M. Z. Zhang, S. Tupin, A. K. Qiao, Y. J. Liu, et al., Prediction of 3D cardiovascular hemodynamics before and after coronary artery bypass surgery via deep learning, Commun. Biol., 4 (2021), 1–12. https://doi.org/10.1038/s42003-020-01638-1 doi: 10.1038/s42003-020-01638-1 |
[15] | L. Liang, W. Mao, W. Sun, A feasibility study of deep learning for predicting hemodynamics of human thoracic aorta, J. Biomech., 99 (2020), 109544. https://doi.org/10.1016/j.jbiomech.2019.109544 doi: 10.1016/j.jbiomech.2019.109544 |
[16] | G. Kissas, Y. B. Yang, E. Hwuang, W. R. Witschey, J. A. Detre, P. Perdikaris, Machine learning in cardiovascular flows modeling: predicting arterial blood pressure from non-invasive 4D flow MRI data using physics-informed neural networks, Comput. Methods Appl. Eng., 358 (2020), 112623. https://doi.org/10.1016/j.cma.2019.112623 doi: 10.1016/j.cma.2019.112623 |
[17] | G. E. Karniadakis, I. G. Kevrekidis, L. Lu, P. Perdikaris, S. F. Wang, L. Yang, Physics-informed machine learning, Nat. Rev. Phys., 3 (2021), 422–440. https://doi.org/10.1038/s42254-021-00314-5 doi: 10.1038/s42254-021-00314-5 |
[18] | M. Raissi, A. Yazdani, G. E. Karniadakis, Hidden fluid mechanics: learning velocity and pressure fields from flow visualizations, Science, 367 (2020), 1026–1030. https://doi.org/10.1126/science.aaw4741 doi: 10.1126/science.aaw4741 |
[19] | S. Z. Cai, Z. P. Mao, Z. C. Wang, M. L. Yin, G. E. Karniadakis, Physics-informed neural networks (pinns) for fluid mechanics: a review, Acta Mech. Sinica, 37 (2021), 1729–1740. https://doi.org/10.1007/s10409-021-01148-1 doi: 10.1007/s10409-021-01148-1 |
[20] | M. Alber, A. B. Tepole, W. R. Cannon, S. De, S. Dura-Bernal, K. Garikipati, et al., Integrating machine learning and multiscale modeling-perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences, NPJ Digital Med., 2 (2019), 115. https://doi.org/10.1038/s41746-019-0193-y doi: 10.1038/s41746-019-0193-y |
[21] | E. Weinan, Machine learning and computational mathematics, Commun. Comput. Phys., 28 (2020), 1639–1670. https://doi.org/10.4208/cicp.OA-2020-0185 doi: 10.4208/cicp.OA-2020-0185 |
[22] | L. Huan, W. Lei, E. Weinan, Machine-learning-based non-newtonian fluid model with molecular fidelity, Phys. Rev. E, 102 (2020), 043309. https://doi.org/10.1103/PhysRevE.102.043309 doi: 10.1103/PhysRevE.102.043309 |
[23] | E. Samaniego, C. Anitescu, S. Goswami, V. M. Nguyen-Thanh, H. Guo, K. Hamdia, et al., An engergy approach to the solution of partial differential equations in computational mechanics via machine learning: concepts, implementation, and applications, Comput. Methods Appl. Mech. Eng., 362 (2020), 112790. https://doi.org/10.1016/j.cma.2019.112790 doi: 10.1016/j.cma.2019.112790 |
[24] | N. Sukumar, A. Srivastava, Exact imposition of boundary conditions with distance functions in physics-informed deep neural networks, Comput. Methods Appl. Mech. Eng., 389 (2022), 114333. https://doi.org/10.1016/j.cma.2021.114333 doi: 10.1016/j.cma.2021.114333 |
[25] | X. W. Jin, S. Z. Cai, H. Li, G. E. Karniadakis, NSFnets (Navier-Stokes Flow Nets): physics-informed neural networks for the incompressible Navier-Stokes equations, J. Comput. Phys., 426 (2021), 109951. https://doi.org/10.1016/j.jcp.2020.109951 doi: 10.1016/j.jcp.2020.109951 |
[26] | A. Valencia, F. Solis, Blood flow dynamics and arterial wall interaction in a saccular aneurysm model of the basilar artery, Comput. Struct., 84 (2006), 1326–1337. https://doi.org/10.1016/j.compstruc.2006.03.008 doi: 10.1016/j.compstruc.2006.03.008 |
[27] | M. Tremmel, S. Dhar, E. I. Levy, J. Mocco, H. Meng, Influence of Intracranial aneurysm-to-parent vessel size ratio on hemodynamics and implication for rupture: results from a virtual experimental study, Neurosurgery, 64 (2009), 622–630. https://doi.org/10.1227/01.NEU.0000341529.11231.69 doi: 10.1227/01.NEU.0000341529.11231.69 |
[28] | K. M. Tse, R. Chang, H. P. Lee, S. P. Lim, S. K. Venkatesh, P. Ho, A computational fluid dynamics study on geometrical influence of the aorta on hemodynamics, Eur. J. Cardio-Thoracic Surg., 43 (2012), 829–838. https://doi.org/10.1093/ejcts/ezs388 doi: 10.1093/ejcts/ezs388 |
[29] | M. Simao, J. Ferreira, A. C. Tomas, J. Fragata, H. Ramos, Aorta ascending aneurysm analysis using CFD models towards possible anomalies, Fluid, 2 (2017), 31. https://doi.org/10.3390/fluids2020031 doi: 10.3390/fluids2020031 |
[30] | R. Savabi, M. Nabaei, S. Farajollahi, N. Fatouraee, Fluid structure interaction modeling of aortic arch and carotid bifurcation as the location of baroreceptors, Int. J. Mech. Sci., 165 (2020), 105222. https://doi.org/10.1016/j.ijmecsci.2019.105222 doi: 10.1016/j.ijmecsci.2019.105222 |
[31] | M. Raissi, Z. C. Wang, M. S. Triantafyllou, G. E. Karniadakis, Deep learning of vortex induced vibrations, J. Fluid Mech., 861 (2019), 119–137. https://doi.org/10.1017/jfm.2018.872 doi: 10.1017/jfm.2018.872 |
[32] | J. Lin, S. Zhou, H. Guo, A deep collocation method for heat transfer in porous media: verification from the finite element method, J. Energy Storage, 28 (2020), 101280. https://doi.org/10.1016/j.est.2020.101280 doi: 10.1016/j.est.2020.101280 |
[33] | K. M. Hamdia, X. Zhuang, T. Rabczuk, An efficient optimization approach for designing machine learning models based on genetic algorithm, Neural Comput. Appl., 33 (2021), 1923–1933. https://doi.org/10.1007/s00521-020-05035-x doi: 10.1007/s00521-020-05035-x |
[34] | A. Kendall, Y. Gal, R. Cipolla, Multi-task learning using uncertainty to weigh losses for scene geometry and semantics, in Proceedings of the IEEE Computer Society, Conference on Computer Vision and Pattern Recognition, IEEE Computer Society, (2018), 7482–7491. https://doi.org/10.1109/CVPR.2018.00781 |
[35] | K. H. Thung, C. Y. Wee, A brief review on multi-task learning, Multimedia Tools Appl., 77 (2018), 29705–29725. https://doi.org/10.1007/s11042-018-6463-x doi: 10.1007/s11042-018-6463-x |
[36] | M. L. Wang, H. X. Li, X. Chen, Y. Chen, Deep learning-based model reduction for distributed parameter systems, IEEE Trans. Syst. Man Cybern.-Syst., 46 (2016), 1664–1674. https://doi.org/10.1109/TSMC.2016.2605159 doi: 10.1109/TSMC.2016.2605159 |