Several bioactivities of chemical compounds in a molecular graph can be expected by using many topological descriptors. A topological descriptor is a numeric quantity which quantify the topology of a graph. By defining the metric on a graph related with a vector space, we consider this graph in the context of few topological descriptors, and quantify the Wiener index, hyper Wiener index, Reciprocal complimentary Wiener index, Schultz molecular topological index and Harary index. We also provide the graphical comparison of our results to describe the relationship and dependence of these descriptors on the involved parameters.
Citation: Fawaz E. Alsaadi, Faisal Ali, Imran Khalid, Masood Ur Rehman, Muhammad Salman, Madini Obad Alassafi, Jinde Cao. Quantifying some distance topological properties of the non-zero component graph[J]. AIMS Mathematics, 2021, 6(4): 3512-3524. doi: 10.3934/math.2021209
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Abstract
Several bioactivities of chemical compounds in a molecular graph can be expected by using many topological descriptors. A topological descriptor is a numeric quantity which quantify the topology of a graph. By defining the metric on a graph related with a vector space, we consider this graph in the context of few topological descriptors, and quantify the Wiener index, hyper Wiener index, Reciprocal complimentary Wiener index, Schultz molecular topological index and Harary index. We also provide the graphical comparison of our results to describe the relationship and dependence of these descriptors on the involved parameters.
1.
Preliminaries
In this article, we always consider simple, non-empty and connected graph G with vertex set V(G) and edge set E(G). The quantity d(u,v) represents the distance between u and v for any u,v∈V(G). Note, that the distance between any two vertices u and v of G is the length of a shortest path between u and v. The quantity ecc(v)=maxu∈V(G)d(u,v) is the eccentricity of v in G. The diameterD(G) of G is the maximum eccentricity among all the eccentricities of the vertices of G. The quantity dv represents the degree of v∈V(G), which is the number of edges incident with v.
Cheminformatics is a new subject defined by the combination of chemistry, mathematics and information. The biological activities and properties of chemical compounds have been predicted by cheminformatics, by studying relationships between Quantitative structure-activity and Quantitative structure-property (QSAR/QSPR). In the study of QSAR/QSPR, the bioactivity of a chemical compounds has been predicted by using physico-chemical properties and topological descriptors such as Wiener index, hyper-Wiener index, Harary index and Schultz index. A topological descriptor is, in a numeric quantity, related to the chemical composition, aiming for correlation between chemical structure and physico-chemical properties. They are, in fact, designed on the ground of transformation of a molecular graph into a number which signifies the topology of that graph. Significant research on topological descriptors of various families of graphs has been done because of their chemical importance [5,6,15,16].
The first non-trivial distance-based topological descriptor was introduced by Wiener, in 1947, to study the boiling points of paraffins. At first, this descriptor was called path number by him and was later on named as Wiener index[22]. There has been considerable research interest in Wiener index and related indices (see the bibliography and therein [17,20]). This index was stated in terms of edge weights which was defined on trees in the beginning. Traditionally, its generalization on general graphs G is defined as:
W(G)=∑u,v∈V(G)d(u,v).
Several mathematical chemists have studied and introduced a large number of generalizations, and extensions of the Wiener index during the period of last two decades. There is an extensive bibliography on this topic can by viewed in [4,11]. One of these extensions was proposed by Randić for trees [19] called, hyper-Wiener index. It was extended by Klein et al.[9] to all connected graphs. This index significantly used as a structure descriptor for prediction of physicochemical properties of chemical compounds, which are important for pharmacology, agriculture and environment protection [3,9,19]. This index is defined as:
WW(G)=12∑u,v∈V(G)d(u,v)(1+d(u,v)).
In 2000, Ivancivc et al.[7] introduced reciprocal complementary Wiener index, and is defined as follows:
RCW(G)=∑u,v∈V(G)1D(G)+1−d(u,v).
The generalization of the Wiener index is the Schultz molecular topological index, which was introduced in 1989 [21], and is defined as:
MTI(G)=∑u,v∈V(G)(du+dv)d(u,v).
In 1993, Plavšić et al.[18] and Ivancivc et al.[8] proposed, independently, a novel topological descriptor and named it as the Harary index in honor of Frank Harary on the occasion of his 70th birthday. Actually, a version of the Harary index was first defined by Mihalić and Trinajstić [14] in 1992 as follows:
Hold(G)=∑u≠v∈V(G)(1d(u,v))2.
However, the Harary index introduced in [8,18] is one of the very much studied topological descriptors and is defined as follows:
H(G)=∑u≠v∈V(G)1d(u,v).
2.
Non-zero component graph
Let V be a finite dimensional vector space over F (where F is a field) with basis set {β1,β2,…,βn} and θ as a null vector space. Then any vector v of V can be represented uniquely as a linear combination of the form
v=b1β1+b2β2+…+bnβn.
The aforementioned representation of v is the basic representation of v with respect to {β1,β2,…,βn}. Non-zero component graph of a finite dimensional vector space V is represented by Γ(V)=(V,E) and is defined with respect to a basis {β1,β2,…,βn} as follows: V=V−θ and for v1,v2∈V,(v1,v2)∈E if v1 and v2 shares at least one βi with non-zero coefficient in their basic representation, i.e., their exists at least one βi along which both v1 and v2 have non-zero components. Unless otherwise mentioned, we take the basis on which the graph is build as {β1,β2,…,βn}[1,2]. The following are some important results about Γ(V).
Theorem 1.[1]Let V be a vector space with dimension n, over a field F having q elements. Then the order of Γ(V) is qn−1 and the size ofΓ(V) is
q2n−qn+1−(2q−1)n2.
Theorem 2.[1]Suppose V is a vector space over F (F is a finite field)having q elements and Γ be its related graph corresponding to basis {β1,β2,…,βn}. Then thedegree of the vertex d1βi1+d2βi2+…+dnβin, where d1,d2,…,dk≠0, is(qk−1)qn−k−1.
Theorem 4.[1]Γ(V) is complete if and only if V is1−dimensional.
Suppose V is a vector space with dimension n≥1 over a field F of order q≥2. Then there are (nk)(q−1)k unique vectors β1v1+β2v2+…+βkvk of length k in Γ(V) for each 1≤k≤n. Let us denote the vertex corresponds to the ith vector of length k by vki,1≤i≤(nk)(q−1)kand1≤k≤n. So the vertex of Γ(V) is V={vki;1≤k≤n,1≤i≤(nk)(q−1)k}.
Let us denote the degree of a vertex vki,1≤i≤(nk)(q−1)k, by dk which is then
dk=(qk−1)qn−k−1fork∈[1,n].
For n exactly 1 and q at least 2, Γ(V) is a complete graph by Theorem 4. In this case, all the topological descriptors can be obtained easily. In the next section, we consider Γ(V) for more than 1-dimensional vector space in the context of the topological descriptors mentioned in the previous section.
3.
Methodology
Graph theoretical tools (path, length, distance, eccentricity, diameter etc.), shortest path algorithm, vertex partitioning method, and combinatorial computing are use to build few helpful parameters and to examine our main descriptors. Moreover, we use Matlab (MathWorks, Natick, MA, USA) for mathematical calculations and verifications (see https://en.wikipedia.org/wiki/MATLAB)[13] to provide a numeric comparison of the examined descriptors, which is shown in Table 1. We also use the maple software (Maplesoft, McKinney, TX, USA) for plotting our mathematical results (see https://en.wikipedia.org/wiki/Maplesoftware)[12].
Table 1.
Numeric comparison of investigated topological indices at some values of q and n.
In this part, we define and build few effective parameters, which are helpful in the assessment of predefined topological discriptors. These are defined as follows:
The distance number of a vertex v in G
D(v|G)=∑u∈V(G)d(u,v);
the double distance number of a vertex v in G
DD(v|G)=12(D(v|G)+∑u∈V(G)(d(u,v))2);
the sum distance number of a vertex v in G
Ds(v|G)=∑u∈V(G)−{v}1(D(G)+1−d(u,v);
and the reciprocal distance number of a vertex v in G
Dr(v|G)=∑u∈V(G)1d(u,v).
According to these parameters, the distance based topological indices, defined in Section 1, become:
W(G)=12∑v∈V(G)D(v|G),
WW(G)=12∑v∈V(G)DD(v|G),
RCW(G)=|G|D(G)+1+∑v∈V(G)Ds(v|G),
MTI(G)=∑v∈V(G)(d(v))2+∑v∈V(G)d(v)D(v|G),
H(G)=12∑v∈V(G)Dr(v|G).
Remark 5.If dim(V) is n where n is at least 2 and q=o(F)≥2, then for all k∈[1,n] and for each 1≤i≤(nk)(q−1)k, d(vki,v)=1 or 2 by Theorem 3 for any v∈V−{vki}. Since the number of vertices lying at distance 1 from vki in Γ(V) is the degree dk of vki, so the number of vertices lying at distance 2 from vki is
|Γ(V)|−dk−1=(qn−1)−(qn−k(qk−1)−1)−1=qn−k−1.
Now, we construct the above defined parameters for Γ(V) in the following proposition:
Proposition 6.Suppose dim(V)=n≥2 and q=o(F)≥2, then forany k∈[1,n] and for each 1≤i≤(nk)(q−1)k, we have
D(vki|Γ(V))=qn−k(qk+1)−3,
DD(vki|Γ(V))=qn−k(qk+2)−4,
Ds(vki|Γ(V))=qn−k+qn−32,
Dr(vki|Γ(V))=qn−k(2qk−1)−32.
Proof. By Remark 5, the distance number of any vertex of Γ(V) is:
By simplifications using binomial expansion, we obtain the required index. The following theorem give us the formula for the hyper-Wiener index of Γ(V).
Theorem 8.Let G=Γ(V) be a non-zero component graph of a vector space Vover a field F with dim(V)=n≥2 and o(F)=q≥2. Then
WW(G)=12(q2n−7qn+2(2q−1)n+4).
Proof. According to the vertex set of G, the formula for the hyper-Wiener index is:
WW(G)=12∑vki∈V(G)DD(vki|G).
Using the double distance number, given in Proposition 6, for each vertex vki, we have
Using binomial expansion, it is quite simple to obtain the required index. The reciprocal complementary Wiener index of Γ(V) is computed in the next result.
Theorem 9.Let G=Γ(V) be a non-zero component graph of a vector space Vover a field F with dim(V)=n≥2 and o(F)=q≥2. Then
RCW(G)=112(3q2n−11qn+3(2q−1)n+5).
Proof. According to the vertex set of G, the formula for the reciprocal complementary Wiener index is:
RCW(G)=|G|D(G)+1+∑vki∈V(G)Ds(vki|G).
Using Theorems 1, 3 and the sum distance number given in Proposition 6, for each vertex vki, we have
After some easy calculations by using binomial expansion, we get the required index. The investigation of the Schultz molecular topological index of Γ(V) is given in the following result:
Theorem 10.Let G=Γ(V) be a non-zero component graph of a vector space Vover a field F with dim(V)=n≥2 and o(F)=q≥2. Then
MTI(G)=2(qn−2)(q2n−3qn+(2q−1)n+1).
Proof. According to the vertex set of G, the formula for the Schultz molecular topological index is:
Required result can be obtained after some easy simplifications by using the binomial expansion.
In the following section we compare the aforementioned investigated indices numerically and graphically.
6.
Comparisons and plots
We provide a numeric comparison of the indices, which are investigated in the previous section for a graph Γ(V) associated with a finite dimensional vector space V of dimension n≥2 over a finite filed F of order q≥2. We evaluated all the indices for different values of q,n and constructed Table 1. From Table 1, we can see that all the indices are in increasing order as the values of q and n are increasing. The graphical representations of the all indices are depicted in Figures 1-5 for certain values of q and n.
This research work was funded by institutional Fund Projects under grant no. (IFPHI-209-611-2020). Therefore, authors gratefully acknowledge technical and financial support from the Ministry of Education King Abdulaziz University, DSR, Jeddah, Saudi Arabia.
Conflict of interest
The authors declare that there is no conflicts of interests regarding the publication of this paper.
References
[1]
A. Das, Non-zero component graph of vector spaces over finite fields, J. Algebra Appl., 16 (2017), 01, 1750007.
[2]
A. Das, Nonzero component graph of a finite dimensional vector spaces, Comm. Algebra, 44 (2016), 3918–3926. doi: 10.1080/00927872.2015.1065866
[3]
J. Devillers, A. T. Balaban (Eds.), Topological indices and related descriptors in QSAR and QSPR, Gordon and Breach, Amsterdam, 1999.
[4]
M. V. Diudea, I. Gutman, Croat. Chem. Acta, 71 (1998), 21–51.
[5]
M. Imran, M. K. Siddiqui, A. A. E. Abunamous, D. Adi, S. H. Rafique, A. Q. Baig, Eccentricity based topological indices of an Oxide network, Mathematics, 6 (2018), 126. doi: 10.3390/math6070126
[6]
M. Imran, M. A. Ali, S. Ahmad, M. K. Siddiqui, A. Q. Baig, Topological sharacterization of the symmetrical structure of bismuth tri-iodide, Symmetry, 10 (2018), 201. doi: 10.3390/sym10060201
[7]
O. Ivancivc, Comparative study of Wiener descriptors for weighted molecular graphs, J. Chem. Inf. Comput. Sci., 14 (2000), 1412–1422.
[8]
O. Ivanciuc, T. S. Balaban, A. T. Balaban, Reciprocal distance matrix, related local vertex invariants and topological indices, J. Math. Chem., 12 (1993), 309–318. doi: 10.1007/BF01164642
[9]
D. J. Klein, I. Lukovits, I. Gutman, On the definition of the hyper-Wiener index for cycle-containing structures, J. Chem. Inf. Comput. Sci., 35 (1995), 50–52. doi: 10.1021/ci00023a007
[10]
J. B. Liu, I. Khalid, M. T. Rahim, M. U. Rehman, F. Ali, M. Salman, Eccentric topological properties of a graph associated to a finite dimensional vector space, Main Group Met. Chem., 43 (2020), 164–176. doi: 10.1515/mgmc-2020-0020
[11]
I. Lukovits, In: M. V. Diudea, Ed., QSAR/QSPR studies by molecular descriptors, Nova, Huntigton, 2001, 31–38.
[12]
Maplesoft, a division of Waterloo Maple Inc., 1996–2020.
[13]
MATLAB. 9.7.0.1190202 (R2019b). Natick, Massachusetts: The MathWorks Inc., 2018.
[14]
Z. Mihalić, N. Trinajstić, A graph theoretical approach to structure property relationships, J. Chem. Educ., 69 (1992), 701–712. doi: 10.1021/ed069p701
[15]
M. Mirzargar, A. R. Ashrafi, Some distance-based topological indices of a non-commuting graph, Hacettepe J. Math. Stat., 4 (2012), 515–526.
[16]
M. Munir, W. Nazeer, Z. Shahzadi, S. M. Kang, Some invariants of circulant graphs, Symmetry, 8 (2016), 134. doi: 10.3390/sym8110134
[17]
S. Nikolić, N. Trinajstić, Z. Mihalić, The Wiener index: Development and Applications, Croat. Chem. Acta, 68 (1995), 105–129.
[18]
D. Plavsić, S. Nikolić, N. Trinajstić, Z. Mihalić, On the Harary index for the characterization of chemical graphs, J. Math. Chem., 12 (1993), 235–250. doi: 10.1007/BF01164638
[19]
M. Randić, Novel molecular description for structure property studies, Chem. Phys. Lett., 211 (1993), 478–483. doi: 10.1016/0009-2614(93)87094-J
[20]
D. H. Rouvray, Should we have designs on topological indices? Chemical Applications of Topology and Graph Theory; King, B.B., Ed. 28; Elsevier, Amsterdam, 1984,159–177.
[21]
H. P. Schultz, Topological organic chemistry 1. Graph theory and topological indices of alkanes, J. Chem. Inf. Comput. Sci., 29 (1989), 227–228. doi: 10.1021/ci00063a012
[22]
H. Wiener, Correlation of heats of isomerization and differences in heats of vaporization of isomers, among the paraffin hydrocarbons, J. Am. Chem. Soc., 69 (1947), 17–20. doi: 10.1021/ja01193a005