Special Issue: Structural analysis of macromolecules using Cryo electron microscopy

Guest Editor

Prof. Elena V Orlova
Crystallography, Institute for Structural and Molecular Biology, Department of Biological Sciences, Birkbeck, University of London, Malet Street, Bloomsbury LONDON WC1E 7HX,UK;
Email: e.orlova@mail.cryst.bbk.ac.uk

Manuscript Topics

Cryo electron microscopy has become a powerful tool in structural biology that allows visualisation of biological objects ranging from bio macromolecules of ~ 150-200 kDa to organelles and cells. This huge variety of sizes and complexity of bio complexes has led to three main approaches for their study: electron crystallography to analyses thin crystals, single particle analysis, and electron tomography. There have been a number of technical advances such as improvement of sources of electrons, making them more coherent and brighter, development methods of sample preparations keeping complexes in hydrated state, and preparation of cell sections of significantly thinner using focused beam milling. Other achievements of the last decade are related to development specialized systems for recording images in electron microscopes: the direct electron detectors. The new detectors have a better representation of high resolution information. These advances lead to further development of software for processing, methods of refinement of structures and their interpretation.


Electron crystallography needs two-dimensional crystals. This is a high-resolution technique and it was recently demonstrated that an atomic resolution can be attained. Single-particle analysis is particularly suited for structural studies of macromolecular complexes from ~ 200 kDa to mega Dalton complexes. During the last three years structures obtained by electron microscopy at the atomic level of resolution became a practical reality: asymmetrical complexes like mitochondrial ribosomes, a potassium channel, rod-shaped helical viruses and icosahedral viruses we analysed at the level 3.5-4.5 Å. Electron tomography is used to study non-repetitive large formations like cells or their components. That opens the road to study biological complexes in vivo at a nanometer resolution.


Cryo electron microscopy provides a unique basis for hybridisation of completely different approaches like biochemistry, mass spectroscopy and X-ray crystallography and integration of these results with native sub-cellular structural information. A combination of cryo electron tomographic imaging with ‘single particle’ approaches, fluorescence microscopy and X-ray microscopy/tomography (correlative microscopy) gives us an opportunity to reveal functioning of living processes at a molecular level. In the light of the modern state of achievements it would be useful to highlight the following aspects of cryo electron microscopy:
• Advances in direct detectors
• Automated data collection in EM
• Best results in single particle structural analysis
 — Asymmetrical ribosome
 — Helical structures
 — Icosahedral structures
 — 2D crystals
• Low resolution and biology
• Interpretation of EM maps-> fittings and tracing of polypeptide chains.
• Structure-function of bio-complexes.


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Paper Submission

All manuscripts will be peer-reviewed before their acceptance for publication. The deadline for manuscript submission is 15 February 2015

Published Papers(14)

Review
Morphology and ultrastructure of retrovirus particles
Wei Zhang Sheng Cao Jessica L. Martin Joachim D. Mueller Louis M. Mansky
2015, Volume 2, Issue 3: 343-369. doi: 10.3934/biophy.2015.3.343
Abstract HTML PDF Cited (53) Viewed (16927)
Research article
Cryo-STEM Tomography of Intact Vitrified Fibroblasts
David Kirchenbuechler Yael Mutsafi Ben Horowitz Smadar Levin-Zaidman Deborah Fass Sharon G. Wolf Michael Elbaum
2015, Volume 2, Issue 3: 259-273. doi: 10.3934/biophy.2015.3.259
Abstract HTML PDF Cited (13) Viewed (11295)
Research article
A guide to investigating colloidal nanoparticles by cryogenic transmission electron microscopy: pitfalls and benefits
Christophe A. Monnier David C. Thévenaz Sandor Balog Gina L. Fiore Dimitri Vanhecke Barbara Rothen-Rutishauser Alke Petri-Fink
2015, Volume 2, Issue 3: 245-258. doi: 10.3934/biophy.2015.3.245
Abstract HTML PDF Cited (10) Viewed (9964)
Review
Protein chainmail variants in dsDNA viruses
Z. Hong Zhou Joshua Chiou
2015, Volume 2, Issue 2: 200-218. doi: 10.3934/biophy.2015.2.200
Abstract HTML PDF Cited (10) Viewed (17439)
Review
Structural studies of T4S systems by electron microscopy
Adam Redzej Gabriel Waksman Elena V Orlova
2015, Volume 2, Issue 2: 184-199. doi: 10.3934/biophy.2015.2.184
Abstract HTML PDF Cited (1) Viewed (7062)
Review
Single-particle based helical reconstruction—how to make the most of real and Fourier space
Carsten Sachse
2015, Volume 2, Issue 2: 219-244. doi: 10.3934/biophy.2015.2.219
Abstract HTML PDF Cited (19) Viewed (9590)
Research article
Decontamination of digital image sensors and assessment of electron microscope performance in a BSL-3 containment
Michael B. Sherman Juan Trujillo Benjamin E. Bammes Liang Jin Matthias W. Stumpf Scott C. Weaver
2015, Volume 2, Issue 2: 153-162. doi: 10.3934/biophy.2015.2.153
Abstract HTML PDF Cited (1) Viewed (7088)
Research article
Structure of the cystic fibrosis transmembrane conductance regulator in the inward-facing conformation revealed by single particle electron microscopy
Ateeq Al-Zahrani Natasha Cant Vassilis Kargas Tracy Rimington Luba Aleksandrov John R. Riordan Robert C. Ford
2015, Volume 2, Issue 2: 131-152. doi: 10.3934/biophy.2015.2.131
Abstract HTML PDF Cited (4) Viewed (7777)
Review
Recent Advances in Cryo-TEM Imaging of Soft Lipid Nanoparticles
Shen Helvig Intan D. M. Azmi Seyed M. Moghimi Anan Yaghmur
2015, Volume 2, Issue 2: 116-130. doi: 10.3934/biophy.2015.2.116
Abstract HTML PDF Cited (50) Viewed (14690)
Review
Structural comparison of contractile nanomachines
Sebastian Kube Petra Wendler
2015, Volume 2, Issue 2: 88-115. doi: 10.3934/biophy.2015.2.88
Abstract HTML PDF Cited (18) Viewed (12835)
Research article
Fast and sensitive rigid-body fitting into cryo-EM density maps with PowerFit
Gydo C.P.van Zundert Alexandre M.J.J. Bonvin
2015, Volume 2, Issue 2: 73-87. doi: 10.3934/biophy.2015.2.73
Abstract HTML PDF Cited (40) Viewed (9834)
Review
Structure and Assembly of the PI3K-like Protein Kinases (PIKKs) Revealed by Electron Microscopy
Angel Rivera-Calzada Andrés López-Perrote Roberto Melero Jasminka Boskovic Hugo Muñoz-Hernández Fabrizio Martino Oscar Llorca
2015, Volume 2, Issue 2: 36-57. doi: 10.3934/biophy.2015.2.36
Abstract HTML PDF Cited (11) Viewed (9778)
Research article
Validation of 3D EM Reconstructions: The Phantom in the Noise
J Bernard Heymann
2015, Volume 2, Issue 1: 21-35. doi: 10.3934/biophy.2015.1.21
Abstract HTML PDF Cited (18) Viewed (5949)
Research article
Fast and accurate conversion of atomic models into electron density maps
O.S. Sorzano Carlos Vargas Javier Otón Joaquín Abrishami Vahid M. de la Rosa-Trevín José del Riego Sandra Fernández-Alderete Alejandro Martínez-Rey Carlos Marabini Roberto M. Carazo José
2015, Volume 2, Issue 1: 8-20. doi: 10.3934/biophy.2015.1.8
Abstract HTML PDF Cited (32) Viewed (8078)