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Model predictions and data fitting can effectively work in spreading COVID-19 pandemic

  • Spreading COVID-19 pandemic has been considered as a global issue. Many international efforts including mathematical approaches have been recently discussed to control this disease more effectively. In this study, we have developed our previous SIUWR model and some transmission parameters are added. Accordingly, the basic reproduction number and elasticity coefficients are calculated at the equilibrium points. Then, some key critical model parameters are identified based on local sensitivities. In addition, the validation of the suggested model is checked by comparing some collected real data in Iraq and France from January 1st, 2021 to December 25th, 2021. Interestingly, there are good agreements between the model results and the real confirmed data using computational simulations in MATLAB. Results provide some biological interpretations and they can be used to control this pandemic more effectively. The model results will be used for both countries in minimizing the impact of this virus on their communities.

    Citation: Bashdar A. Salam, Sarbaz H. A. Khoshnaw, Abubakr M. Adarbar, Hedayat M. Sharifi, Azhi S. Mohammed. Model predictions and data fitting can effectively work in spreading COVID-19 pandemic[J]. AIMS Bioengineering, 2022, 9(2): 197-212. doi: 10.3934/bioeng.2022014

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  • Spreading COVID-19 pandemic has been considered as a global issue. Many international efforts including mathematical approaches have been recently discussed to control this disease more effectively. In this study, we have developed our previous SIUWR model and some transmission parameters are added. Accordingly, the basic reproduction number and elasticity coefficients are calculated at the equilibrium points. Then, some key critical model parameters are identified based on local sensitivities. In addition, the validation of the suggested model is checked by comparing some collected real data in Iraq and France from January 1st, 2021 to December 25th, 2021. Interestingly, there are good agreements between the model results and the real confirmed data using computational simulations in MATLAB. Results provide some biological interpretations and they can be used to control this pandemic more effectively. The model results will be used for both countries in minimizing the impact of this virus on their communities.



    The emergence of the pandemic COVID-19 in China in the late of 2019 became a critical issue these years globally. In 1930, for the first time the history of coronaviruses recorded when some domesticated chickens were infected by bronchitis virus (IBV) infection. After that in 1960 it was reported in humans for the first time. This disease had a great effect on worldwide economy and people's daily life. Due to the quick outbreak of the virus, specialists tried to refer to the drugs they have already used many years ago for treating SARS and common flu [1]. WHO announced COVID-19 epidemic on 11th March 2020. By January 20th, 2022, there were 340,120,476 cases and 5,586,044 of them were deaths and 273,396,004 of them recovered from the disease. It is clear that this disease has not been controlled globally yet and it needs more strategies and preventions to control it.

    There were some recently published studies that discussed and analyzed the key critical elements about mathematical models and the spreading of COVID-19 pandemic. There was a study that describes a public data from COVID-19 epidemic in France. It estimates about the model dynamics states of COVID-19 epidemic in France and the regional level SEIR mechanistic model was used. The results showed that a lifting of the lockdown has a great role for further interventions and avoid the epidemic widely [2]. In different studies, a group of researchers developed a mathematical model for this disease, it was defined as a novel Θ-SEIHRD model. This model supports to deal with certain characteristics of this disease that studies the fraction Θ of detected cases for the real total infected cases. It also helps to estimate the required beds in hospitals. The results show that the estimation performed at an early stage of the epidemic could suggest powerful results. These results could be used as a guidance to countries were hugely affected by COVID-19 [3]. A few other researchers conducted some researches on the African continents on COVID-19 epidemic development. The SEIQRDP model was used to establish the realistic estimation of the short-term pandemic condition. The SEIQRDP was a modification of the classical SIR model extensively used in mathematical epidemiology. This model relies on quarantine to a great extent as a productive way of the spread of COVID-19 [4]. Another study sheds light on how social measures such as distance, regional lockdown, quarantine and global public health vigilance, influence the model parameters and the model states. Another critical parameter of COVID-19 is the basic reproduction number called R0. The global sensitivity analysis is another important technique for infectious diseases. This has been used to observe the impact of different parameters on R0 [5]. Recently, there was another study that describes local sensitivity analysis of COVID-19 disease. They identified the model critical parameters and considered the relation between model variables and parameters [6].

    An effective key element to discuss this disease further and suggest more preventions is data fitting and confirmed cases. This relation between two sets becomes a great step forward to predict this disease further. Data fitting can be used for all infectious disease models, two mathematical models of epidemics have been used to deal with Ebola epidemic in Guinea, Liberia and Sierra Leone. The simulation studies of the model with variable values of sensitive parameters of the spread of the outbreak are undertaken and incorporated in the paper [7]. Recently, there was a compartmental logistic regression and Gaussian model to study and investigate the spread of COVID-19 in Iraq and Egypt by developing SEIR model. The logistic regression and Gaussian models were applied in both countries for the prediction of confirmed cases, and found a very good fitness for incidence data [8]. In addition, there was another study that focused on situation of Saudi Arabia Kingdom for COVID-19. The least square curve fitting was used for the evaluation of the parameters with R0 ≈ 1.2937 as the number of basic reproduction [9].

    There are also many recently published papers on COVID-19 and their impacts in the society. A fractional order of COVID-19 model with Mittag-Leffler kernel was used to analyze this pandemics, the suggested techniques are given in [10]. The stochastic modelling approaches such as transition probabilities and parametric perturbations were applied to calculate some computational dynamics for the SIR model of COVID-19 [11]. The classical SEIR compartment model was used by contact tracing and hospitalization strategies to show the spreading of COVID-19 outbreak [12]. The reader can see more published studies about COVID-19 pandemic in [13][20].

    Identifying the model critical parameters can be also considered by optimal control analysis that provides more control strategies. This technique has been widely used to COVID-19 pandemics for driving control policies and more interventions. Recently, there was a study that suggested a mathematical model with optimal control to highlight the negative impact of quarantine on diabetic people with Cost-effectiveness presented in [21]. Then, this method was used in analyzing the spread of COVID-19 pandemic with a case study of Brazil and cost-effectiveness, this is given in [22]. More recently, the idea of optimal control analysis was also applied to another suggested model of COVID-19 to show the impact of rapid-tests in controlling this pandemic [23].

    Analyzing the suggested SIUWR model based on elasticity of basic reproduction number becomes an important step forward in this study compared to the other existing studies about the confirmed cases of COVID-19 pandemics in Iraq and France. Therefore, we suggest the elasticity coefficient approach to calculate the local sensitivities of basic reproduction number for each model parameters. Another novelty here is the data collection of COVID-19 infected cases for both countries, this provides the future predictions and interventions. Accordingly, we have collected the daily confirmed cases of COVID-19 from January 1st, 2021 to December 25th, 2021. The collected real data here give us a great understanding and suggested more interventions and strategies to control this pandemic. Comparing the model results with the real confirmed cases is another novelty for the suggested SIUWR model.

    There are some significant contributions in this study. Firstly, we develop and update our previously published model of the COVID-19 pandemic given in [6]. We add more transmission rates to the suggested SIUWR model in order to understand this disease more widely and accurately. Secondly, we compare the model results with the confirmed cases in Iraq and France from January 1st, 2021 to December 25th, 2021. Another contribution here is identifying the model critical parameters based on sensitivity of basic reproduction number for each model transmission parameters that helps us to identify the key critical model parameters in spreading this disease.

    The organization of this paper is as follows. In Section two, we developed our previously published model and construct the suggested SIUWR model based on our assumptions and model transmissions. Using the next generation matrix to drive the formula of basic reproduction number discussed in Section three. Calculating the model sensitivity based elasticity coefficients is given in Section four. The computational model simulations and the daily infected cases is compared in Section five. Finally, some conclusions and suggestions are given in Section six.

    The idea of classical kinetic reactions provides an effective tool to represent the biological infectious disease mechanisms in terms of model differential equations with constant rates. There are three important model assumptions in order to define the model equations. They are called model states, parameters, and model equations. We start with n irreversible chemical mechanisms and m chemical species, they are given below:

    mj=1αijAjkimj=1βijAj,i=1,2,,n

    where αij and βij are chemical constant coefficients, Aj for j = 1,2,...,m are chemical components. The chemical reaction rates for equation (1) can be defined as follows:

    vi=kimj=1Ajαij(t),i=1,2,,n

    The model differential equations for the chemical reactions (1) are given as follows:

    d𝒜dt=iJivi,i=1,2,,n

    where 𝒜m,i=βijαij for i = 1,2,...,n and j = 1,2,...,m. Equation (3) can be also shown as follows:

    d𝒜jdt=j(𝒜).

    The functions j, for j = 1,2,...,m are generally non-linear, and model equation (4) may not be solved analytically. Therefore, numerical approaches and computational simulations play an important role in solving such equations. The reader can see more details about the chemical reactions and their applications in systems biology [24][27]. Recently, we proposed the SIUWR model to predict the spreading of COVID-19 pandemic. We used the model to find some critical model parameters based on the local sensitivities, the reader can see more details about our previously published paper in [6]. In this paper, we developed the model and added some more transmission rates. For example, we added the natural birth rate λ, the natural death rate d1, the asymptomatic infected death rate d2, the unreported symptomatic infected death rate α1, the reported symptomatic infected death rate α2, and the immunity loss rate α3. The suggested model includes five compartments named susceptible individuals S, asymptomatic infected individuals I, reported symptomatic infected individuals W, unreported symptomatic infected individuals U, and recovered individuals R. The model transmission rates and compartments are shown in Figure 1.

    Figure 1.  The model transmission network for COVID-19 pandemic.

    All model compartments and parameters are shown in Table 1. Using the mass action law, the model differential equations are defined below:

    dSdt=λβS(I+U)Nd1S+α3R,dIdt=βS(I+U)N(γ+δ+d1+d2+α4)I,dUdt=δI(η+α1+d1)U,dWdt=γI(η+α2+d1)W,dRdt=ηW+ηU+α4I(α3+d1)R.}

    With initial model populations S(0) >0, I(0) > 0, U(0) > 0, W(0) > 0, R(0) ≥ 0.

    Table 1.  Description of the model states and parameters with their estimated values in Iraq and France.
    Symbols Biological definitions Estimated values - Iraq Estimated values - France Sources
    S(0) Initial population of susceptible people 40584909 65063283 [28]
    I(0) Initial population of asymptomatic infected people 789 17523 [28]
    U(0) Initial population of unreported symptomatic infected people 395 9000 Assumed
    W(0) Initial population of reported symptomatic infected people 394 8523 Assumed
    R(0) Initial population of recovered people 581634 25000968 [28]
    N Total population 41179351 67564251 Estimated
    λ Recruitment rate 1482.5537 2241.554 Assumed
    β Constant rate between susceptible people and asymptomatic infected people 0.552 0.558 Assumed
    γ Constant rate between asymptomatic infected people and reported symptomatic infected people 0.2 0.2 Assumed
    δ Constant rate between asymptomatic infected people and unreported symptomatic infected people 0.1 0.1 Assumed
    η Constant rate between reported-unreported symptomatic infected people and recovered people 0.1428 0.1428 Assumed
    d1 Natural death rate 0.001 0.001 Assumed
    d2 The asymptomatic infected death rate 1.5 × 10−2 1.5 × 10−2 Assumed
    α1 The unreported symptomatic death rate 1.5 × 10−4 1.5 × 10−4 Assumed
    α2 The reported symptomatic death rate 1.7826 × 10−2 1.7826 × 10−2 Assumed
    α3 The immunity loss rate 0.03 0.03 Assumed
    α4 Transition rate between asymptomatic infected and recovered individuals 0.488 0.538 Assumed

     | Show Table
    DownLoad: CSV

    The quantity of basic reproduction number, R0 has a great role in spreading of COVID-19. It defines as the number of secondary infections that infected by a single primary infection in the population. According to the recently published works of epidemiological models, R0 can provide a wide range of critical model parameters identification. The next-generation matrix is an effective method to derive the basic reproduction number for infectious disease models. This technique was discussed in more details in [29][32]. If the individuals are infected in a compartment, then the compartment is classified as an infected compartment. This compartment includes both asymptomatic and symptomatic individuals. Suppose that an infectious disease model has m compartments (x1, x2,...,xm). The model equations are given as follows:

    dxidt=fi(x), for i=1,2,,m.

    These compartments can be split into n disease compartments (infected individuals) and k non-disease compartments (non-infected individuals) as follows:

    (x1,x2,,xm)=(x1,x2,,xnninfected,xn+1,xn+2,,xmmnoninfected).

    Let Fi(x) be the rate of appearance of new infections in ith compartment and the transfer rate is given below:

    Vi(x)=Vi(x)V+i(x),

    where V+i is the rate of transfer of individuals into the ith compartment and Vi is the rate of transfer of individuals out of the ith compartment, they are shown in Figure 2.

    Figure 2.  Input and output fluxes related to compartment xIi.

    Again, we denote the subpopulations by xIRn and xNRK. The grouping of new infections from all other model compartments is essential. It helps in determining the basic reproduction number R0. The compartmental model Equation (6) can be put in the following form:

    {dxIidt=Fi(xI,xN)Vi(xI,xN),i=1,2,,ndxNjdt=Mj(xI,xN).j=1,2,,k

    Now, we define the Jacobian matrices F and V as follows:

    F=[Fi(x0)xIj]and V=[Vi(x0)xIj],1i,jn

    where x0 is the free equilibrium point for Equation (6), F is the entry wise non-negative and V is a non-singular matrix. The basic reproduction ratio R0 is given by the spectral radius (dominant eigenvalue) of the next generation matrix FV−1 given below:

    R0=ρ(FV1)

    where ρ denotes the spectral radius. The reader can see more details regarding to the next generation matrix and the basic reproduction ratio with their applications in the infection disease models given in [33][38].

    Taking the right-hand side of system (5) and equating it to zero, the disease-free equilibrium point is given below:

    E10=(λd1,0,0,0,0).

    ddt[IWU]=[βS(I+U)N00][(d1+d2+γ+δ+α4)I(η+α2+d1)WγI(η+α1+d1)UδI]

    For system (10) and using the equilibrium point E10=(λd1,0,0,0,0), the matrices F and V are defined below:

    F=[λβNd10λβNd1000000],V=[γ+δ+d1+d2+α400γη+α2+d10δ0η+α1+d1].

    Therefore, the next generation matrix is as follows:

    FV1=[λβNd1(γ+δ+d1+d2+α4)+βλδNd1(γ+δ+d1+d2+α4)(η+α1+d1)0λβNd1(η+α1+d1)000000].

    Thus, FV−1 has one dominant eigenvalue. The equation of the basic reproduction number for system (5) with the free equilibrium point E10=(λd1,0,0,0,0) is given below:

    R0=βλ(α1+d1+δ+η)Nd1(γ+δ+d1+d2+α4)(η+α1+d1).

    The concept of elasticity for infectious disease models has an effective role in determining sensitivity between R0 and the model parameters. This technique was discussed in more details in [31],[36],[38]. For calculating such coefficients, the following essential formula is used,

    ΓR0ω=R0ω*ωR0,

    where ω is the set of all parameters, we calculate the elasticity index of R0 for each model parameter. They are given below:

    ΓR0λ=1,ΓR0β=1,ΓR0γ=γγ+δ+d1+d2+α4,ΓR0δ=δ(γ+d2+α4α1η)(α1+d1+δ+η)(γ+δ+d1+d2+α4),ΓR0η=ηδ(α1+d1+δ+η)(η+α1+d1),ΓR0d1=(2d31+(d24η4δγ4α1α4)d212(η+δ+α1)(η+d2+δ+γ+α1+α4)d1(η+α1)(η+δ+α1)(d2+δ+γ+α4))(α1+d1+δ+η)(γ+δ+d1+d2+α4)(η+α1+d1),ΓR0d2=d2γ+δ+d1+d2+α4,ΓR0α1=α1δ(α1+d1+δ+η)(η+α1+d1),ΓR0α2=0,ΓR0α3=0,ΓR0α4=α4γ+δ+d1+d2+α4,

    Using the estimated parameters, we can compute the model elasticity; see Table 2.

    Table 2.  Elasticity coefficient value of R0 regarding to model parameters.
    Elasticity coefficients Iraq France
    ΓR0λ 1 1
    ΓR0β 1 1
    ΓR0γ −0.24875621 −0.23419203
    ΓR0δ 0.28554195 0.29282404
    ΓR0η −0.40664526 −0.40664526
    ΓR0d1 −1.00409143 −1.00401861
    ΓR0d2 −0.01865671 −0.01756440
    ΓR0α1 −0.00042714 −0.00042714
    ΓR0α2 0 0
    ΓR0α3 0 0
    ΓR0α4 −0.60696517 −0.62997658

     | Show Table
    DownLoad: CSV

    Results given in Table 2 show the positive and negative relation for the model elasticity. These give us the direct or indirect relation between R0 and the model parameters. For example, this coefficient is positive for the set of parameters {λ, β, δ}. This means that when the parameters {λ, β, δ} are increased, the value of R0 is increased too and this virus spreads further. On the other hand, the signs of {γ, η, d1, d2, α1, α4} are negative. It means that the value of basic reproduction number can be reduced by increasing such parameters. However, the reproduction number does not have relation with the parameters {α2, α3} that means increasing or decreasing the value of {α2, α3} do not make a significant effect on the value of R0.

    Using computational tools are essential for analyzing complex infectious disease models. Here in this study, we have used MATLAB tools to compute the predicated values for the populations of the spreading COVID-19. We collected the real data of this disease in Iraq and France from 1st of January 2021 to 25th of December 2021. All the confirmed cases for both countries are given in the supplementary files (Tables 3 and 4). The estimated variables and parameters given in Table 1 for Iraq and France are used in computational simulations using MATLAB. Figures 3 and 6 show the model results using the initial states and parameters given in Table 1 for Iraq and France, respectively. The total populations of susceptible, symptomatic infected, unreported symptomatic infected, reported symptomatic infected and recovered individuals are computed. In addition, Figure 4(a) shows the total number of infected cases in Iraq using real data given in Table 3. Accordingly, the model results and confirmed infected cases are compared in Figure 4(b), it is clear that there is a good agreement between both model results and the real data. In this vein, Figure 5(a) shows the total infected people in France using the real data given in Table 4. On the other hand, Figure 5(b) shows both model results and real data of the number of infected individuals in France. It is seen that the model results have a good agreement with the real data. Therefore, the suggested SIWUR model can be further used for future predictions and estimations.

    Numerical results here give more biological interpretations. As it is clear that computational simulations help international efforts for controlling this pandemic significantly. The dynamics of each compartment can be clearly shown, such model dynamics provide an important environment to predict the future spreading of this virus. For instance, the number of asymptomatic infected, reported symptomatic, unreported symptomatic individuals are simply shown in the computational results here. Accordingly, our model results show that the number of infected people in Iraq has been dramatically changed for the months of February to October. While, there was a big change in the number of confirmed cases in France between March and July. Interestingly, the number of infected people in both countries were significantly declined at the end of 2021.

    Figure 3.  Computational simulations for the model states given in system (5) of the COVID–19 using MATLAB for the estimated values in Iraq given in Table 1; (a) Susceptible individuals, (b) Asymptomatic infected individuals, (c) Unreported symptomatic infected individuals, (d) Reported symptomatic infected individuals, (e) Recovered individuals.
    Figure 4.  The number of infected people, a) The real confirmed cases in Iraq, b) The model results and the confirmed cases in Iraq.
    Figure 5.  The number of infected people, a) The real confirmed cases in France, b) The model results and the confirmed cases in France.
    Figure 6.  Computational simulations for the model states given in system (5) of the COVID–19 using MATLAB for the estimated values in France given in Table 1; (a) Susceptible individuals, (b) Asymptomatic infected individuals, (c) Unreported symptomatic infected individuals, (d) Reported symptomatic infected individuals, (e) Recovered individuals.

    Analyzing and studying the spreading of COVID-19 pandemic has become a global topic and many studies have been proposed. Comparing the confirmed cases with the model results provide a wide range of environment to predict and give suggestions for further preventions.

    In this study, we developed and updated our previously published model of the COVID-19 pandemic and added more transmission rates in order to understand this disease more widely and accurately. In addition, we compared the model results and the confirmed cases in Iraq and France from January 1st, 2021 to December 25th, 2021. Then, the model critical parameters based on sensitivity of basic reproduction number for each model transmission parameters are identified. This helps us to identify the key critical model parameters in spreading this disease.

    The suggested model here is more appropriated and fitted to the real confirmed cases in Iraq and France. Accordingly, the computational results show that there are good agreements between the model dynamics and daily cases in both countries. This is an effective forward step to study this model more widely and accurately. Identifying the critical model parameters based on sensitivity and elasticity techniques help us to understand such global issues theoretically and practically. Interestingly, the suggested model can be also used to further predications and give more control strategies.


    Acknowledgments



    The authors extend their appreciation to “University of Raparin” for providing feasible research environments. These supports are greatly appreciated.

    Conflict of interest



    The authors declare no conflict of interest.

    Author contributions



    Bashdar Salam contributed in the methodology, formal analysis, original draft preparation. Sarbaz Khoshnaw contributed in the Conceptualization, validation, writing—review and editing, supervision. Abubakr Adabar contributed in the software, formal analysis, data collection, computational simulations. Hedayat Sharifi contributed in validation, methodology, formal analysis. Azhi Mohammed contributed in the software, formal analysis, data collection. All authors have read and agreed to the published version of the manuscript.

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