Citation: Notice Ringa, Chris T. Bauch. Spatially-implicit modelling of disease-behaviour interactions in the context of non-pharmaceutical interventions[J]. Mathematical Biosciences and Engineering, 2018, 15(2): 461-483. doi: 10.3934/mbe.2018021
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Mathematical models in epidemiology often make the assumption that successful control of epidemics is only determined by the availability and effective deployment of control measures such as vaccination and isolation, whose success largely depends on factors such as quantity of vaccine and logistical constraints. In recent years, some mathematical models are focusing on endogenously incorporating the impact of human behavioral patterns on the regulation of communicable diseases. Upon gaining awareness about an infectious disease outbreak, susceptible individuals may decrease their infection risk by isolating themselves or reducing interactions with their friends, colleagues, etc, through staying at home and avoiding social contacts. This practice is known as social distancing [16,22]. Along with social distancing, hand-washing, use of masks, and other respiratory etiquette are further examples of so-called 'non-pharmaceutical interventions' (NPIs) that can reduce infection spread [31]. While healthcare providers often advise the public on appropriate NPIs, behavioral choices of individual members of the host population partially determine the dynamics and feasibility to control an infectious disease outbreak.
Social distancing and other NPIs have assisted the control of infections such as flu, severe acute respiratory syndrome (SARS) and plague [6,12,40,23,14,36,15,38,21,2]. However despite the availability of a large amount of information about the dangers and risks of sexually transmitted infections (STIs), actions like unsafe sexual behavior and needle sharing during intravenous drug use have been linked to the pandemic-scale dissemination of STIs such as HIV/AIDS [26,24,39,25]. Generally, negligence or relaxation of precautionary measures is brought about by factors such as lack of awareness and engaging in infection-enhancing social practices such as handshakes, hug, kisses, sharing of food and concurrent sexual partner, as well as some cultural practices. The 2014 epidemic outbreak of Ebola in West Africa is an example of how cultural or religious practices, such as engaging in risky rituals and inappropriate handling of the sick or deceased, also influence the dynamics of infectious diseases [28].
Human behavior also plays a role in the regulation of some animal infectious diseases. For instance, the use of dogs in hunting and grazing cattle in countries such as Kenya and Botswana, influences transmission of canine diseases between domestic dogs and the African wild dog [1]. Although culling (slaughtering of infectious or at-risk animals) has been found to effectively control foot and mouth disease, farmers' resistance towards this intervention measure (because of fear of loss of livestock) often makes it difficult to bring the disease under control.
In [12] the authors explore the impact of social distancing on the spread of an infection by incorporating health status-based contact behavior patterns into a mean-field equations epidemic model. Thus, the transmission dynamics are governed by differing contact levels between individuals of different health types. For example, due to the perceived risk of infection, susceptible individuals are likely to avoid contact with infected individuals, while maintenance contact with recovered individuals may have a less significant impact.
In [15] the authors explore the idea that the adoption of social distancing or other NPIs is driven by the level of information individuals have, such that members of the host population who possess first hand information become more cautious and therefore less susceptible than those who have second hand information. Similarly, individuals who have second hand information are less susceptible than those who posses third hand information, etc. This study was carried out by modeling information transmission and spread of an infection using mean-field equations and individual-based epidemic models. The research also discusses the significance of repeated re-generation of awareness into the population to ensure that most individuals have access to primary, or close-to-primary, information, which increases the number of individuals who exercise contact precautions and/or NPIs.
In [14] the authors capture the dynamic nature of individuals' decisions leading to adoption or non-practice of social distancing, by assuming that the network geometry within which the host population resides (particularly the neighborhood size) changes over time, depending on individuals' perceived risk of infection. Thus, adjustment of individuals' perceptions about the disease over time results in variation of contact pattens and, therefore, it affects the infection dynamics. Other researchers have explored game-theoretical [33] or rule-based simulation models [35,37] of social distancing.
The spatial dimension of social distancing has been explored in some of this previous work [15,14,35,37]. Spatial dynamics can be analytically intractable, hence the frequent decision to employ agent-based models. However, one method for implicitly capturing spatial dynamics that often permits analysis is moment closure approximation (MCA). MCAs employ pairs, triples, quadruples, etc., of connected individuals, as model state variables, such that transmission takes place only between connected susceptible and infectious individuals on the network. MCAs are usually comprised by a system of differential equations, where each equation describes time evolution of second order, third order, fourth order, etc., spatial correlations between individual members of the host population. Equations of motion for pairs involve terms in triples, equations of motion for triples involves terms in quadruples, etc. Therefore in order to obtain a closed system of equations, this hierarchy is truncated by techniques referred to as moment closures. Carrying out the closure at the level of pairs produces a pair approximation model [34,8,7,5,29,30,32,13,9,19,11,17].
Here our objective is to demonstrate how pair approximations and analytical expressions for the basic reproduction number can be developed for spatially-structured socio-epidemiological systems. We develop and analyze a pair approximation model and explore the impacts of NPIs on the spread of an infectious disease. We incorporate impacts of NPIs by dividing the susceptible population into susceptible individuals who protect
A state
The rate of infection transmission from an infectious individual to a neighbouring state
d[S]dt=−τ[SI]−ξ[SpS]+κ[Sp]−ρ[SI]d[Sp]dt=−τp[SpI]+ξ[SpS]−κ[Sp]+ρ[SI]d[I]dt=τ[SI]+τp[SpI]−σ[I]d[R]dt=σ[I]d[SS]dt=−2n−1n[SS][S]((τ+ρ)[SI]+ξ[SpS])+2κ[SSp]d[SSp]dt=−n−1n((τ+ρ)[SI][SSp][S]+τp[SSp][SpI][Sp]−ξ[SSp][SS][S]−ρ[SI][SS][S])−ξ[SSp]+κ([SpSp]−[SSp])d[SpSp]dt=−2n−1n(τp[SpI][SpSp][Sp]−ρ[SI][SSp][S])+2ξ[SSp]−2κ[SpSp]d[SI]dt=n−1n([SI][S](τ[SS]−(τ+ρ)[SI]−ξ[SSp])+τp[SSp][SpI][Sp])−(τ+σ+ρ)[SI]+κ[SpI]d[SpI]dt=n−1n([SI][S]((τ+ξ)[SSp]+ρ[SI])+[SpI][Sp]τp([SpSp]−[SpI]))−(τp+σ+κ)[SpI]+ρ[SI]d[SR]dt=−n−1n[SR][S]((τ+ρ)[SI]+ξ[SSp])+σ[SI]+κ[SpR]d[SpR]dt=−n−1n(τp[SpI][SpR][Sp]−[SR][S](ρ[SI]+ξ[SpS]))+σ[SpI]−κ[SpR]d[II]dt=2n−1n(τ[SI]2[S]+τp[SpI]2[Sp])+2τ[SI]+2τp[SpI]−2σ[II]d[IR]dt=n−1n(τ[SI][SR][S]+τp[SpI][SpR][Sp])+σ([II]−[IR])d[RR]dt=2σ[IR]. | (1) |
The basic reproduction number
Here we use the pair approximation model above to derive an expression for
The condition under which the infection will spread is
d[I]dt>0⇒τ[SI]+τp[SpI]−σ[I]>0, | (2) |
which can be rearranged to yield
τ[SI]+τp[SpI]σ[I]>1. | (3) |
Therefore, we write
R0=τ[SI]σ[I]+τp[SpI]σ[I]. | (4) |
Next we express pairs
CXY=Nn[XY][X][Y], | (5) |
where
[XY]=[n]N[X][Y]CXY, | (6) |
therefore,
R0=nσN(τ[S]CSI+τp[Sp]CSpI). | (7) |
At the initial stage of an epidemic, we assume that the population is comprised mainly by susceptible individuals, only a few of whom practice NPIs:
[S]+[Sp]≈N,where [Sp]<<[S] | (8) |
We define
R0=nσ(τ(1−sp)CSI+τpspCSpI). | (9) |
To estimate the values for
R0=nσ(τ(1−sp)CminSI+τpspCminSpI). | (10) |
The quantities
The derivation of these quantities as well as the full expression of
We derive reduced versions of
In the Appendix we simplified Equation (17) to derive the expression for the basic reproduction number for dynamics in which adoption of NPIs results from social learning only (case (a) above), and that NPIs are highly effective as a control measure (
R0≈τnχ−ξ+√τ2n2χ2+ξ(ξ+2τnχ)2σ, | (11) |
where
χ≈τ(n−2)+√τ2(n−2)2+4ττp(n−1)2τn. |
Equation (11) confirms that social learning (
For comparison to Equation (11), in the Appendix we also simplified Equation (17) to derive the expression for the basic reproduction number for dynamics in which adoption of NPIs results from exposure learning only (case (b) above), and that NPIs are highly effective as a control measure (
R0≈τnχ+√(τ2n2χ+4τpρn)χ2σ, | (12) |
where
χ≈τ(n−2)−ρ+√τ2(n−2)2−2τρ(n−2)+ρ2+4ττp(n−1)2τn. |
Hence, more rapid adoption of NPIs due exposure learning (
In the Appendix we show that when adopted NPIs are not strict (such that
The spatial distribution of susceptible individuals (
As expected,
Increasing the rate of adopting NPIs, either through exposure learning (
Numerical analysis of our model was carried out in MATLAB using the ode45 solver Similar to the results from the
Increasing the initial number of infection source points with
Cumulative infections over a period of two months decrease with adoption of precautionary behavior due to social learning at a rate
If individuals who practice NPIs lose this habit (captured by conversion from state
Many of the behaviours that fall under the rubric of NPIs, such as hand-washing and respiratory etiquette, are learned preventively and are practiced in a population even before an epidemic. This builds up the proportion of protective individuals before introduction of the disease. Thus, the effectiveness of social learning may thus be considerably improved, although it is not clear how far in advance social learning must begin for it to be useful. In this subsection we consider scenarios where social learning can occur both prior to and after the introduction of an infection. In particular, we contrast a scenario where only social learning is practiced (but social learning begins to spread before the epidemic starts), to a scenario where only exposure learning takes place, and we compare their performance.
In the absence of exposure learning (
In contrast to observations made in most of the simulations in the previous subsections, social learning reduces the epidemic final size more effectively than exposure learning, except when social learning is not introduced soon enough before the epidemic, or when there are not enough initial protective individuals (Figure 8 a-c). In either of these two exceptional cases, there is an insufficient pool of protective susceptible individuals in the population at the beginning of the epidemic, for social learning to be effective.
NPIs partly determine the feasibility of infection control for many infectious diseases, especially ones where pharmaceutical interventions are not yet available. Here, we constructed a pair approximation model of a self-limiting infectious disease where individuals can choose to adopt NPIs either in response to learning it from other susceptible individuals, or having been stimulated to learn it from neighbouring an infectious person. Our objective was to demonstrate how pair approximation methods might be useful for studying socio-epidemiological processes in spatially structured populations.
We found that the impact of NPIs depends on the structure of the initial network configuration, particularly, the number and the neighborhood distribution of infectious, susceptible and individuals who practice NPIs, at the beginning of an outbreak. Both social learning and exposure learning lead to a decrease in the final size. At baseline parameter values, exposure learning is much more effective than social learning if social learning can only begin during the outbreak. However, social learning can outperform exposure learning if social learning begins early enough before the epidemic (although the initial number of protective individuals is not as important). While peak disease prevalence increases with the rate at which protective susceptible individuals stop the habit of practicing NPIs, the response of the infection peak to the rate of forgetting is qualitatively different for the two types of learning. We also found that, under certain parameter regimes, if infection source points are initially surrounded by protective individuals, increasing the number of infection source points at the beginning of an outbreak actually decreases the infection peak. This phenomena would not be revealed by the non-spatial, mean-field equations models.
Our model makes several simplifying assumptions. The model is based on the assumption that disease propagation and spatially localized learning take place only between connected neighbors on a regular network. In real life, networks within which infections spread are more complex, and mean-field effects (such as mass media) may be important. Future work could extend the pair approximation model to account for these effects. On the other hand, the importance of higher-order spatial correlations in many spatial systems is known. In spatially-structured epidemic systems in particular it may be necessary to use triple approximations instead of just pair approximations in order to capture dynamics of the full spatially explicit model with a high degree of accuracy [4]. Our paper did not evaluate the importance of higher-order correlations in spatial socio-epidemiological dynamics, and this aspect is left for future research as well.
In Section 3.2.2 we found that social learning is more effective in reducing cumulative infections than exposure learning, provided there is a sufficient pool of protective susceptible individuals in the population at the beginning of the epidemic. Future work could include derivation of the threshold for the initial population size of protective susceptible individuals, above which social learning will be more effective than exposure learning. Also, in general, social networks are structurally different from networks in which infections spread. Thus, future work could also develop pair approximations for dual-level networks consisting of both a social network and a disease spread network.
In conclusion, we have shown how pair approximation models that incorporate both spatial transmission of diseases and impacts of NPI decision-making can be developed and analyzed. Future research using this methodology might yield insights regarding infection control in spatially-structured socio-epidemiological systems.
Derivation of the equation of motion for
In moment closure approximations the equation of motion for a state variable
dg(t)dt=∑ϵ∈eventsr(ϵ)Δg(ϵ), | (13) |
where
The time evolution of the number of S-I pairs is determined by the following events.
Infection at a rate
Transmission of the disease from an infectious,
Recovery of the infectious individual at a rate,
Adoption of NPIs at a rate
Adoption of NPIs at a rate
Stopping the use of NPIs by a protective individual at a rate
To demonstrate the next steps of the derivation of the equation of motion for
Using this notation, the master equation for the dynamics of
The positive (
Next we replace quantities such as
enable us to write the equation of motion for
We assume the disease spreads a regular network where neighbors of an individual are themselves conditionally independent, therefore, third order correlations take the form
That is, to close the system (i.e. approximate higher-order moments by lower-order moments) of equations we use the binomial ordinary pair approximation (OPA):
[ijk]=(n−1)n[ij][jk][j]. | (14) |
The binomial OPA is based on the idea that the disease state of a node
Derivation of the basic reproduction number. Here we derive the expressions for
We substitute the equations of motion for the number of susceptible-infectious pairs,
Similarly, the equation of motion for the correlation between susceptible individuals who protect and infectious individuals can be written as
We make biologically reasonable assumptions about the disease to simplify the equations above as follows. At the beginning of the epidemic there are very few infectious individuals (initial inoculation:
Although it may be necessary to also derive the equations of motion for three other correlation functions (for
Note that now
and
Solving
CminSI=R−τpnspCminSpI+√(R−τpnspCminSpI)2+4τnsp(1−sp)(τp(n−1)CSpS+κ)CminSpI2τn(1−sp), | (15) |
CminSpI=Q+√(T−τn(1−sp)CminSI)2+4τpnsp(1−sp)((n−1)(τ+ξ)CSpS+ρ/sp)CminSI2τpnsp, | (16) |
where
Simplifying assumptions
Note that at the beginning of an outbreak the initial network configuration constitutes very few susceptible individuals who practice NPIs, so that while
R0≈T+nτ(1−sp)χ+√(T−τn(1−sp)χ)2+4τpnsp(1−sp)((n−1)(τ+ξ)CSpS+ρ/sp)χ2σ, | (17) |
where
Simulation results involving the basic reproduction number (in the Results section) are based on Equation (17).
Below we explore other scenarios of the disease to present simpler expressions of
(a) Adoption of NPIs through social learning only
Here individuals are assumed to learn about the disease, and therefore adopt NPIs, from their contacts who already practice preventative behavior, and not from their infectious neighbors. That is we let
If the population size,
Also, we simplify
Thus, the expression of the basic reproduction number can be written as
R0≈τp(n−2)−ξ+τnχ+√(τp(n−2)−ξ−τnχ)2+4τpsp(n−1)(τ+ξ)χ2σ, | (18) |
where
High efficacy case
Here we estimate the expression of
and
The resulting expression of the basic reproduction number is
R0≈τp(n−2)−ξ+τnχ+√τ2n2χ2−2τp(n−2)(ξ+τnχ)+ξ(ξ+2τnχ)+4τpsp(n−1)(τ+ξ)χ2σ, | (19) |
where
Model parameter-based
We simplify Equation (19) further by prescribing a reasonable model parameter regime. Let
We use these observations to cancel terms of Equation (19) that are insignificant (as per the prescribed parameter regime) to write the expression of the basic reproduction number as
R0≈τnχ−ξ+√τ2n2χ2+ξ(ξ+2τnχ)2σ, | (20) |
where
(b) Adoption of NPIs due to exposure learning only
Here we consider a scenario where individual members of the population gain awareness about the disease, and in turn adopt NPIs, due to being next to infectious contacts only. Thus, we assume
Applying similar arguments as in part (a) above, we simplify the original values of
R0≈τp(n−2)+τnχ+√(τp(n−2)−τnχ)2+4τpnsp(τ(n−1)CSpS+ρ/sp)χ2σ, | (21) |
where
High efficacy case
Applying the condition for a high efficacy case (i.e.
R0≈τp(n−2)+τnχ+√[τ2n2χ−2ττpn(n−2)+4ττpsp(n−1)+4τpρn]χ2σ, | (22) |
where
χ≈τ(n−2)−ρ−τpn+√τ2(n−2)2−2τ(n−2)(ρ+τpn)+ρ(ρ+2τpn)+4ττp(n−1)2τn. |
Model parameter-based
We prescribe the same parameter regime used in part (a) above, but note that here
R0≈τnχ+√(τ2n2χ+4τpρn)χ2σ, | (23) |
where
χ≈τ(n−2)−ρ+√τ2(n−2)2−2τρ(n−2)+ρ2+4ττp(n−1)2τn. |
Scenarios considered for the development of the above expressions of the basic reproduction number, are summarized in Table 1.
(a) General expression of |
Equation (10) |
(b) Expression of |
Equation (17) |
(c) Simplification of |
Equation (18) |
(d) Simplification of |
Equation(19) |
(e) Simplification of |
Equation (20) |
(f) Simplification of |
Equation(21) |
(g) Simplification of |
Equation (22) |
(h) Simplification of |
Equation (23) |
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(a) General expression of |
Equation (10) |
(b) Expression of |
Equation (17) |
(c) Simplification of |
Equation (18) |
(d) Simplification of |
Equation(19) |
(e) Simplification of |
Equation (20) |
(f) Simplification of |
Equation(21) |
(g) Simplification of |
Equation (22) |
(h) Simplification of |
Equation (23) |
(a) General expression of |
Equation (10) |
(b) Expression of |
Equation (17) |
(c) Simplification of |
Equation (18) |
(d) Simplification of |
Equation(19) |
(e) Simplification of |
Equation (20) |
(f) Simplification of |
Equation(21) |
(g) Simplification of |
Equation (22) |
(h) Simplification of |
Equation (23) |