Research article

Exploring the role of preferential solvation in the stability of globular proteins through the study of ovalbumin interaction with organic additives

  • Received: 30 May 2023 Revised: 24 September 2023 Accepted: 10 October 2023 Published: 25 October 2023
  • The impact of denaturing and stabilizing osmolytes on protein conformational dynamics has been extensively explored due to the significant contribution of protein solvation to the stability, function, malfunction and regulation of globular proteins. We studied the effect of two nonspecific organic molecules, urea, which is a conventional denaturant, and dimethyl sulfoxide (DMSO), which is a multilateral organic solvent, on the stability and conformational dynamics of a non-inhibitory serpin, ovalbumin (OVA). A differential scanning microcalorimetry (DSC) experimental series conducted in the phosphate buffer solutions containing 0–30% of additives revealed the destabilizing impact of both urea and DMSO in a mild acidic media, manifested in the gradual decrease of thermal unfolding enthalpy and transition temperature. These findings differ from the results observed in our study of the mild alkaline DMSO buffered solutions of OVA, where the moderate stabilization of OVA was observed in presence of 5–10% of DMSO. However, the overall OVA interaction patterns with urea and DMSO are consistent with our previous findings on the stability and conformational flexibility of another model globular protein, α-chymotrypsin, in similar medium conditions. The obtained results could be explained by preferential solvation patterns. Positive preferential solvation of protein by urea in urea/water mixtures mainly weakens the hydrophobic interactions of the protein globule and eventually leads to the disruption of the tertiary structure within the whole range of urea concentrations. Alternatively, under certain experimental conditions in DMSO/water mixtures, positive preferential solvation by water molecules can be observed. We assume that the switch to the positive preferential solvation by DMSO, which is shown to have a soft maximum around 20–30% DMSO, could be shifted towards lower additive concentrations due to the intrinsic capability of ovalbumin OVA to convert into a heat-stable, yet flexible set of conformations that have increased the surface hydrophobicity, characteristic to molten-globule-like states.

    Citation: Tatyana Tretyakova, Maya Makharadze, Sopio Uchaneishvili, Mikhael Shushanyan, Dimitri Khoshtariya. Exploring the role of preferential solvation in the stability of globular proteins through the study of ovalbumin interaction with organic additives[J]. AIMS Biophysics, 2023, 10(4): 440-452. doi: 10.3934/biophy.2023025

    Related Papers:

  • The impact of denaturing and stabilizing osmolytes on protein conformational dynamics has been extensively explored due to the significant contribution of protein solvation to the stability, function, malfunction and regulation of globular proteins. We studied the effect of two nonspecific organic molecules, urea, which is a conventional denaturant, and dimethyl sulfoxide (DMSO), which is a multilateral organic solvent, on the stability and conformational dynamics of a non-inhibitory serpin, ovalbumin (OVA). A differential scanning microcalorimetry (DSC) experimental series conducted in the phosphate buffer solutions containing 0–30% of additives revealed the destabilizing impact of both urea and DMSO in a mild acidic media, manifested in the gradual decrease of thermal unfolding enthalpy and transition temperature. These findings differ from the results observed in our study of the mild alkaline DMSO buffered solutions of OVA, where the moderate stabilization of OVA was observed in presence of 5–10% of DMSO. However, the overall OVA interaction patterns with urea and DMSO are consistent with our previous findings on the stability and conformational flexibility of another model globular protein, α-chymotrypsin, in similar medium conditions. The obtained results could be explained by preferential solvation patterns. Positive preferential solvation of protein by urea in urea/water mixtures mainly weakens the hydrophobic interactions of the protein globule and eventually leads to the disruption of the tertiary structure within the whole range of urea concentrations. Alternatively, under certain experimental conditions in DMSO/water mixtures, positive preferential solvation by water molecules can be observed. We assume that the switch to the positive preferential solvation by DMSO, which is shown to have a soft maximum around 20–30% DMSO, could be shifted towards lower additive concentrations due to the intrinsic capability of ovalbumin OVA to convert into a heat-stable, yet flexible set of conformations that have increased the surface hydrophobicity, characteristic to molten-globule-like states.


    Abbreviations

    DSC

    differential scanning calorimetry

    OVA

    ovalbumin

    S-OVA

    S-ovalbumin

    DMSO

    dimethyl sulfoxide

    α-CT

    α-chymotrypsin

    加载中

    Acknowledgments



    This work was supported by Shota Rustaveli National Science Foundation of Georgia (SRNSFG) research grant for young scientists YS-18-2034.

    Conflict of interest



    The authors declare no conflict of interest.

    [1] Onuchic JN, Nymeyer H, García AE, et al. (2000) The energy landscape theory of protein folding: insights into folding mechanisms and scenarios. Adv Protein Chem 53: 87-152. https://doi.org/10.1016/S0065-3233(00)53003-4
    [2] Whitford PC, Onuchic JN (2015) What protein folding teaches us about biological function and molecular machines. Curr Opin Struct Biol 30: 57-62. https://doi.org/10.1016/j.sbi.2014.12.003
    [3] Schug A, Onuchic JN (2010) From protein folding to protein function and biomolecular binding by energy landscape theory. Curr Opin Pharmacol 10: 709-714. https://doi.org/10.1016/j.sbi.2014.12.003
    [4] Warshel A, Parson W (2001) Dynamics of biochemical and biophysical reactions: insight from computer simulations. Q Rev Biophys 34: 563-679. https://doi.org/10.1017/S0033583501003730
    [5] Stein PE, Leslie AGW, Finch JT, et al. (1991) Crystal structure of uncleaved ovalbumin at l.95 a resolution. J Mol Biol 221: 941-959. https://doi.org/10.1016/0022-2836(91)80185-W
    [6] Stein PE, Huntington JA (2001) Structure and properties of ovalbumin. J Chromat B 756: 189-198. https://doi.org/10.1016/S0378-4347(01)00108-6
    [7] Law RH, Zhang Q, McGowan S, et al. (2006) An overview of the serpin superfamily. Genome Biol 7: 216. https://doi.org/10.1186/gb-2006-7-5-216
    [8] Carrell RW, Read RJ (2017) How serpins transport hormones and regulate their release. Semin Cell Dev Biol 62: 133-141. https://doi.org/10.1016/j.semcdb.2016.12.007
    [9] Bose D, Chakrabarti A (2017) Substrate specificity in the context of molecular chaperones. IUBMB Life 69: 647-659. https://doi.org/10.1002/iub.1656
    [10] Shinohara H, Iwasaki T, Miyazaki Y, et al. (2005) Thermostabilized ovalbumin that occurs naturally during development accumulates in embryonic tissues. Biochim Biophys Acta 1723: 106-113. https://doi.org/10.1016/j.bbagen.2005.02.016
    [11] Da Silva M, Beauclercq S, Harichaux G, et al. (2015) The family secrets of avian egg-specific ovalbumin and its related proteins Y and X. Biol Reprod 93: 71. https://doi.org/10.1095/biolreprod.115.130856
    [12] Huntington JA, Patston PA, Gettins PG (1995) S-ovalbumin, an ovalbumin conformer with properties analogous to those of loop-inserted serpins. Protein Sci 4: 613-621. https://doi.org/10.1002/pro.5560040403
    [13] Castellano AC, Barteri M, Bianconi A, et al. (1996) Conformational changes involved in the switch from ovalbumin to S-ovalbumin. Z Naturforsch C J Biosci 51: 379-385. https://doi.org/10.1515/znc-1996-5-615
    [14] Paolinelli C, Barteri M, Boffi F, et al. (1997) Structural differences of ovalbumin and S-ovalbumin revealed by denaturing conditions. Z Naturforsch C J Biosci 52: 645-653. https://doi.org/10.1515/znc-1997-9-1012
    [15] Hammershøj M, Larsen LB, Andersen A B, et al. (2002) Storage of shell eggs influences the albumen gelling properties. LWT-Food Sci Technol 35: 62-69. https://doi.org/10.1006/fstl.2001.0811
    [16] Nakamura R, Ishimaru M (1981) Changes in the shape and surface hydrophobicity of ovalbumin during its transformation to S-ovalbumin. Agr Biol Chem 45: 2775-2780. https://doi.org/10.1080/00021369.1981.10864966
    [17] Sugimoto Y, Sanuki S, Ohsako S, et al. (1999) Ovalbumin in developing chicken eggs migrates from egg white to embryonic organs while changing its conformation and thermal stability. J Biol Chem 274: 11030-11037. https://doi.org/10.1074/jbc.274.16.11030
    [18] Tufail S, Sherwani MA, Shoaib S, et al. (2018) Ovalbumin self-assembles into amyloid nanosheets that elicit immune responses and facilitate sustained drug release. J Biol Chem 293: 11310-11324. https://doi.org/10.1074/jbc.RA118.002550
    [19] Khan MS, Singh P, Azhar A, et al. (2011) Serpin inhibition mechanism: a delicate balance between native metastable state and polymerization. J Amino Acids 2011: 606797. https://doi.org/10.4061/2011/606797
    [20] Bhattacharya M, Mukhopadhyay S (2012) Structural and dynamical insights into the molten-globule form of ovalbumin. J Phys Chem B 116: 520-531. https://doi.org/10.1021/jp208416d
    [21] Huntington JA (2011) Serpin structure, function and dysfunction. J Thromb Haemost 9: 26-34. https://doi.org/10.1111/j.1538-7836.2011.04360.x
    [22] Akazawa T, Ogawa M, Hayakawa S, et al. (2018) Structural change of ovalbumin-related protein X by alkali treatment. Poult Sci 97: 1730-1737. https://doi.org/10.3382/ps/pey024
    [23] Tanaka N, Morimoto Y, Noguchi Y, et al. (2011) The mechanism of fibril formation of a non-inhibitory serpin ovalbumin revealed by the identification of amyloidogenic core regions. J Biol Chem 286: 5884-5894. https://doi.org/10.1074/jbc.M110.176396
    [24] Jin H, Li P, Jin Y, et al. (2021) Effect of sodium tripolyphosphate on the interaction and aggregation behavior of ovalbumin-lysozyme complex. Food Chem 352: 129457. https://doi.org/10.1016/j.foodchem.2021.129457
    [25] Zhou J, Geng S, Wang Q, et al. (2020) Ovalbumin-modified nanoparticles increase the tumor accumulation by a tumor microenvironment-mediated “giant”. J Mater Chem B 8: 7528-7538. https://doi.org/10.1039/D0TB00542H
    [26] Kavitha K, Palaniappan L (2022) FTIR study of synthesized ovalbumin nanoparticles. Anal Biochem 636: 114456. https://doi.org/10.1016/j.ab.2021.114456
    [27] Magsumov T, Fatkhutdinova A, Mukhametzyanov T, et al. (2019) The effect of dimethyl sulfoxide on the lysozyme unfolding kinetics, thermodynamics, and mechanism. Biomolecules 9: 547. https://doi.org/10.3390/biom9100547
    [28] Karim M, Boikess RS, Schwartz RA, et al. (2023) Dimethyl sulfoxide (DMSO): a solvent that may solve selected cutaneous clinical challenges. Arch Dermatol Res 315: 1465-1472. https://doi.org/10.1007/s00403-022-02494-1
    [29] Oh KI, Baiz CR (2018) Crowding stabilizes DMSO-water hydrogen-bonding interactions. J Phys Chem B 122: 5984-5990. https://doi.org/10.1021/acs.jpcb.8b02739
    [30] Nandi S, Parui S, Halder R, et al. (2018) Interaction of proteins with ionic liquid, alcohol and DMSO and in situ generation of gold nano-clusters in a cell. Biophys Rev 10: 757-768. https://doi.org/10.1007/s12551-017-0331-1
    [31] Krylov AV, Pfeil W, Lisdat F (2004) Denaturation and renaturation of cytochrome c immobilized on gold electrodes in DMSO-containing buffers. J Electroanal Chem 569: 225-231. https://doi.org/10.1016/j.jelechem.2004.03.005
    [32] Kim SH, Yan YB, Zhou HM (2006) Role of osmolytes as chemical chaperones during the refolding of aminoacylase. Biochem Cell Biol 84: 30-38. https://doi.org/10.1139/o05-148
    [33] Ou WB, Park YD, Zhou HM (2002) Effect of osmolytes as folding aids on creatine kinase refolding pathway. Int J Biochem Cell Biol 34: 136-147. https://doi.org/10.1016/S1357-2725(01)00113-3
    [34] Kumar A, Darreh-Shori T (2017) DMSO: A mixed-competitive inhibitor of human acetylcholinesterase. ACS Chem Neurosci 8: 2618-2625. https://doi.org/10.1021/acschemneuro.7b00344
    [35] Murray KA, Gibson MI (2022) Chemical approaches to cryopreservation. Nat Rev Chem 6: 579-593. https://doi.org/10.1038/s41570-022-00407-4
    [36] Almarsson O, Klibanov AM (1996) Remarkable activation of enzymes in nonaqueous media by denaturing organic cosolvents. Biotechnol Bioeng 49: 87-92. https://doi.org/10.1002/(SICI)1097-0290(19960105)49:1<87::AID-BIT11>3.0.CO;2-8
    [37] Privalov PL, Gill SG (1988) Stability of protein structure and hydrophobic interaction. Adv Protein Chem 39: 191-234. https://doi.org/10.1016/S0065-3233(08)60377-0
    [38] Kim PS, Baldwin RL (1990) Intermediates in the folding reactions of small proteins. Annu Rev Biochem 59: 631-660. https://doi.org/10.1146/annurev.bi.59.070190.003215
    [39] Khoshtariya D, Shushanian M, Sujashvili R, et al. (2003) Enzymatic activity of α-chymotrypsin in the urea-induced molten-globule-like state: a combined kinetic/thermodynamic study. J Biol Phys Chem 3: 2-10.
    [40] Yamasaki M, Takahashi N, Hirose M (2003) Crystal structure of S-ovalbumin as a non-loop-inserted thermostabilized serpin form. J Biol Chem 278: 35524-35530. https://doi.org/10.1074/jbc.M305926200
    [41] Timasheff SN, Xie G (2003) Preferential interactions of urea with lysozyme and their linkage to protein denaturation. Biophys Chem 105: 421-448. https://doi.org/10.1016/S0301-4622(03)00106-6
    [42] Nnyigide OS, Lee SG, Hyun K (2018) Exploring the differences and similarities between urea and thermally driven denaturation of bovine serum albumin: intermolecular forces and solvation preferences. J Mol Model 24: 75. https://doi.org/10.1007/s00894-018-3622-y
    [43] Tretyakova T, Shushanyan M, Partskhaladze T, et al. (2013) Simplicity within the complexity: Bilateral impact of DMSO on the functional and unfolding patterns of α-chymotrypsin. Biophys Chem 175–176: 17-27. https://doi.org/10.1016/j.bpc.2013.02.006
    [44] Tretyakova T, Makharadze M, Uchaneishvili S, et al. Impact of small organic molecules on the stability and conformational flexibility of globular proteins, Proceedings of International Conference on Life Sciences, Engineering and Technolog (2020).
    [45] Roy S, Jana B, Bagchi B (2012) Dimethyl sulfoxide induced structural transformations and non-monotonic concentration dependence of conformational fluctuation around active site of lysozyme. J Chem Phys 136: 115103. https://doi.org/10.1063/1.3694268
    [46] Arakawa T, Kita Y, Timasheff SN (2007) Protein precipitation and denaturation by dimethyl sulfoxide. Biophys Chem 131: 62-70. https://doi.org/10.1016/j.bpc.2007.09.004
    [47] Auton A, Bolen DW, Rösgen J (2008) Structural thermodynamics of protein preferential solvation: Osmolyte solvation of proteins, aminoacids, and peptides. Proteins 73: 802-813. https://doi.org/10.1002/prot.22103
    [48] Jaganade T, Chattopadhyay A, Raghunathan S, et al. (2020) Urea-water solvation of protein side chain models. J Mol Liq 311: 113191. https://doi.org/10.1016/j.molliq.2020.113191
    [49] Batista ANL, Batista JM, Bolzani VS, et al. (2013) Selective DMSO-induced conformational changes in proteins from Raman optical activity. Phys Chem Chem Phys 15: 20147-20152. https://doi.org/10.1039/C3CP53525H
    [50] Dilip HN, Chakraborty D (2019) Effect of cosolvents in the preferential binding affinity of water in aqueous solutions of amino acids and amides. J Mol Liq 300: 112375. https://doi.org/10.1016/j.molliq.2019.112375
    [51] Godlewska J, Cieśla B, Wawer J, et al. (2022) DMSO and TMAO-differences in interactions in aqueous solutions of the K-peptide. Int J Mol Sci 23: 1872. https://doi.org/10.3390/ijms23031872
  • Reader Comments
  • © 2023 the Author(s), licensee AIMS Press. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0)
通讯作者: 陈斌, bchen63@163.com
  • 1. 

    沈阳化工大学材料科学与工程学院 沈阳 110142

  1. 本站搜索
  2. 百度学术搜索
  3. 万方数据库搜索
  4. CNKI搜索

Metrics

Article views(488) PDF downloads(89) Cited by(0)

Article outline

Figures and Tables

Figures(3)  /  Tables(1)

/

DownLoad:  Full-Size Img  PowerPoint
Return
Return

Catalog