Special Issue: Advanced Computational Methods in Bioinformatics

Guest Editors

Prof. Xiangtao Li
School of Artificial Intelligence, Jilin University, China
Email: lixt314@jlu.edu.cn


Prof. Jian Zhang
School of Computer and Information Technology, Xinyang Normal University
Email: jianzhang@xynu.edu.cn


Prof. Dr. Jun Shen
School of Computing and Information Technology University of Wollongong, NSW 2522 Australia
Email: jshen@uow.edu.au


Prof. Dr. William Guo
School of Engineering and Technology, Central Queensland University, North Rockhampton, Qld 4702, Australia
Email: w.guo@cqu.edu.au


Manuscript Topics
Recent developments in algorithms and computational methods have led to wide applications of intelligent computing. These applications have deeply touched every aspect of our daily life. During the period of the COVID-19 pandemic, artificial intelligence helps forecast the spread of virus and develop early warning systems. Besides that, biological intelligence contributes a lot to accelerate the progress of drug design and vaccine development, which saves countless lives. Modern artificial and biological intelligence will dominate protein and gene data for its unpreceded learning capabilities to process complex data. Together with traditional machine learning algorithms, evolutionary computation and deep learning hold the promise of solving complex medical engineering problems. Knowledge engineering serves as a transfer to process knowledge source to the expert system, which involves all scientific and social aspects. This special issue welcomes contributions that report innovative research and applications leading to the advancement of artificial and biological research with the support of advanced computational methods.


Scopes
• Molecular biology and biomedical engineering
• Bioinformatics, and computational biology
• Proteomics, and gene ontology analysis
• Evolutionary computation
• Computational methods in knowledge engineering
• Hybrid learning, machine learning applications
• Deep learning and applications


Instructions for authors
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Please submit your manuscript to online submission system
https://aimspress.jams.pub/

Paper Submission

All manuscripts will be peer-reviewed before their acceptance for publication. The deadline for manuscript submission is 20 December 2021

Published Papers(20)

Research article
Effective method for detecting error causes from incoherent biological ontologies
Yu Zhang Haitao Wu Jinfeng Gao Yongtao Zhang Ruxian Yao Yuxiang Zhu
2022, Volume 19, Issue 7: 7388-7409. doi: 10.3934/mbe.2022349
Abstract HTML PDF Viewed (1680)
Research article
Self-organizing map based differential evolution with dynamic selection strategy for multimodal optimization problems
Shihao Yuan Hong Zhao Jing Liu Binjie Song
2022, Volume 19, Issue 6: 5968-5997. doi: 10.3934/mbe.2022279
Abstract HTML PDF Cited (3) Viewed (2346)
Research article
A new document representation based on global policy for supervised term weighting schemes in text categorization
Longjia Jia Bangzuo Zhang
2022, Volume 19, Issue 5: 5223-5240. doi: 10.3934/mbe.2022245
Abstract HTML PDF Cited (2) Viewed (2089)
Research article
A hybrid ant colony algorithm for the winner determination problem
Jun Wu Mingjie Fan Yang Liu Yupeng Zhou Nan Yang Minghao Yin
2022, Volume 19, Issue 3: 3202-3222. doi: 10.3934/mbe.2022148
Abstract HTML PDF Cited (7) Viewed (2802)
Research article
The parallel computing of node centrality based on GPU
Siyuan Yin Yanmei Hu Yuchun Ren
2022, Volume 19, Issue 3: 2700-2719. doi: 10.3934/mbe.2022123
Abstract HTML PDF Cited (2) Viewed (2993)
Research article
Elevated expression of the MYB proto-oncogene like 2 (MYBL2)-encoding gene as a prognostic and predictive biomarker in human cancers
Zekun Xin Yang Li Lingyin Meng Lijun Dong Jing Ren Jianlong Men
2022, Volume 19, Issue 2: 1825-1842. doi: 10.3934/mbe.2022085
Abstract HTML PDF Viewed (2965)
Research article
Federated personalized random forest for human activity recognition
Songfeng Liu Jinyan Wang Wenliang Zhang
2022, Volume 19, Issue 1: 953-971. doi: 10.3934/mbe.2022044
Abstract HTML PDF Cited (10) Viewed (4194)
Research article
A coevolutionary algorithm based on the auxiliary population for constrained large-scale multi-objective supply chain network
Xin Zhang Zhaobin Ma Bowen Ding Wei Fang Pengjiang Qian
2022, Volume 19, Issue 1: 271-286. doi: 10.3934/mbe.2022014
Abstract HTML PDF Cited (6) Viewed (2810)
Research article
A TP53-associated immune prognostic signature for the prediction of the overall survival and therapeutic responses in pancreatic cancer
Yi Liu Long Cheng Xiangyang Song Chao Li Jiantao Zhang Lei Wang
2022, Volume 19, Issue 1: 191-208. doi: 10.3934/mbe.2022010
Abstract HTML PDF Cited (9) Viewed (10562)
Research article
Recognition study of denatured biological tissues based on multi-scale rescaled range permutation entropy
Bei Liu Wenbin Tan Xian Zhang Ziqi Peng Jing Cao
2022, Volume 19, Issue 1: 102-114. doi: 10.3934/mbe.2022005
Abstract HTML PDF Cited (3) Viewed (2428)
Research article
PVT1 is a prognostic marker associated with immune invasion of bladder urothelial carcinoma
Peiyuan Li Gangjie Qiao Jian Lu Wenbin Ji Chao Gao Feng Qi
2022, Volume 19, Issue 1: 169-190. doi: 10.3934/mbe.2022009
Abstract HTML PDF Cited (1) Viewed (3363)
Research article
Predicting S-nitrosylation proteins and sites by fusing multiple features
Wang-Ren Qiu Qian-Kun Wang Meng-Yue Guan Jian-Hua Jia Xuan Xiao
2021, Volume 18, Issue 6: 9132-9147. doi: 10.3934/mbe.2021450
Abstract HTML PDF Viewed (2824)
Research article
Contribution of endothelial cell-derived transcriptomes to the colon cancer based on bioinformatics analysis
Jie Wang Md. Nazim Uddin Rehana Akter Yun Wu
2021, Volume 18, Issue 6: 7280-7300. doi: 10.3934/mbe.2021360
Abstract HTML PDF Cited (6) Viewed (4306)
Research article
Modified chemical reaction optimization and its application in engineering problems
Shijing Ma Yunhe Wang Shouwei Zhang
2021, Volume 18, Issue 6: 7143-7160. doi: 10.3934/mbe.2021354
Abstract HTML PDF Cited (1) Viewed (3183)
Research article
Meta-analysis identifying epithelial-derived transcriptomes predicts poor clinical outcome and immune infiltrations in ovarian cancer
Dong-feng Li Aisikeer Tulahong Md. Nazim Uddin Huan Zhao Hua Zhang
2021, Volume 18, Issue 5: 6527-6551. doi: 10.3934/mbe.2021324
Abstract HTML PDF Cited (4) Viewed (5010)
Research article
TYLER, a fast method that accurately predicts cyclin-dependent proteins by using computation-based motifs and sequence-derived features
Jian Zhang Xingchen Liang Feng Zhou Bo Li Yanling Li
2021, Volume 18, Issue 5: 6410-6429. doi: 10.3934/mbe.2021318
Abstract HTML PDF Viewed (2413)
Research article
Extracted features of national and continental daily biweekly growth rates of confirmed COVID-19 cases and deaths via Fourier analysis
Ray-Ming Chen
2021, Volume 18, Issue 5: 6216-6238. doi: 10.3934/mbe.2021311
Abstract HTML PDF Viewed (2853)
Research article
A seven-gene prognostic model related to immune checkpoint PD-1 revealing overall survival in patients with lung adenocarcinoma
Wei Niu Lianping Jiang
2021, Volume 18, Issue 5: 6136-6154. doi: 10.3934/mbe.2021307
Abstract HTML PDF Cited (3) Viewed (4251)
Research article
SeekDoc: Seeking eligible doctors from electronic health record
Lu Jiang Shasha Xie Yuqi Wang Xin Xu Xiaosa Zhao Ye Zhang Jianan Wang Lihong Hu
2021, Volume 18, Issue 5: 5347-5363. doi: 10.3934/mbe.2021271
Abstract HTML PDF Viewed (3328)
Research article
Track the dynamical features for mutant variants of COVID-19 in the UK
Ray-Ming Chen
2021, Volume 18, Issue 4: 4572-4585. doi: 10.3934/mbe.2021232
Abstract HTML PDF Cited (4) Viewed (3123)