Citation: Sarah S. Knox. Gene x environment interactions as dynamical systems: clinical implications[J]. AIMS Molecular Science, 2016, 3(1): 1-11. doi: 10.3934/molsci.2016.1.1
[1] | Knox SS, Guo X, Zhang Y, et al. (2010) AGT M235T genotype /anxiety interaction and gender in the HyperGEN Study.PLoS One 5: E13353. doi: 10.1371/journal.pone.0013353 |
[2] | Colhoun HM, McKeigue PM, Smith GD (2003) Problems of reporting genetic associations with complex outcomes. Lancet 361: 865-872. doi: 10.1016/S0140-6736(03)12715-8 |
[3] | Munafo MR, Flint J (2004) Meta-analysis of genetic association studies.Trends Genet 20: 439-444. doi: 10.1016/j.tig.2004.06.014 |
[4] | Bissel MJ, LaBarge MA (2005) Context, tissue plasticity, and cancer: are tumor stem cells also regulated by the microenvironment? Cancer Cell 7: 17-23. |
[5] | Pedersen NL (1994) The nature and nurture of personality. In De Raad, Hofstee WKB, Van Heck GL (Eds.) Personality Psychology in Europe Tilburg University Press, 110-132. |
[6] | Knox SS (2010) From ‘omics’ to complex disease: a systems biology approach to gene-environment interactions in cancer. Cancer Cell Int 10: 11. |
[7] | Robbins CL, Hutchings Y, Dietz PM (2014) History of preterm birth and subsequent cardiovascular disease: a systematic review.AJOG 210: 285-297. |
[8] | Plomin R (2011) Commentary: Why are children in the same family so different? Non-shared environment three decades later. Int J Epi 40: 582-592. |
[9] | Burt CH (2015) Heritability studies: methodological flaws, invalidated dogmas, and changing paradigms. In Perry BL (ed.) Genetics, Health and Soc (Adv in Med Sociol), 1-44. Emerald Group Publishing Limited. |
[10] | Burt CH, Simons RL (2015) Hertitability studies in the postgenomic era: the fatal flaw is conceptual.Criminology 53: 103-112. |
[11] | Joseph J (2013) The use of the classical twin method in the social and behavioral sciences: the fallacy continues.J Mind Behav34: 1-40. |
[12] | Stenberg A (2013) Interpreting estimates of heritability – A note on the twin decomposition.Econ Hum Biol 11: 201-205. doi: 10.1016/j.ehb.2012.05.002 |
[13] | Knox SS, Wilk JB, Zhang Y (2004) A genome scan for hostility: the national heart, lung, and blood institute family heart study. Mol Psychiatry 9: 124-127. doi: 10.1038/sj.mp.4001447 |
[14] | Hofseth LJ, Hussain SP, Harris CC (2004) P53: 25 years after its discovery. Trends Pharmacol Sci 25: 177-181. doi: 10.1016/j.tips.2004.02.009 |
[15] | Hainaut P, Wiman KG (2009) 30 years and a long way into p53 research. Lancet Oncol 10: 913-919. |
[16] | Parihar A, Eubank TD,Doseff A (2010) Monocytes and macrophages regulate immunity through dynamic networks of survival and cell death.J Innate Immun 2: 204-215. doi: 10.1159/000296507 |
[17] | Cohen IR, Harel D (2007) Explaining a complex living system: dynamics, multi-scaling and emergence.JR Soc Interface 4: 175-182. doi: 10.1098/rsif.2006.0173 |
[18] | Gibson DG, Glass JI, Lartigue C, et al. (2010) Creation of a bacterial cell controlled by a chemically synthesized genome. Science 329: 38-39. doi: 10.1126/science.1193749 |
[19] | MacNeil LT, Walhout AJM (2011) Gene regulatory networks and the role of robustness in stochasticity in the control of gene expression. Genome Res 21: 645-657. doi: 10.1101/gr.097378.109 |
[20] | Barabasi AL, Albert R (1999) Emergence of scaling in random networks. Science 286: 509-512. |
[21] | Albert R (2005) Scale-free networks in cell biology. J Cell Sci 118: 4947-4957. |
[22] | Kruse J, Gu W (2009) Modes of p53 regulation. Cell 137: 609-622. doi: 10.1016/j.cell.2009.04.050 |
[23] | Riley T, Sontag E, Chen P, et al. (2008) Transcriptional control of human p53 regulated genes.Nat Rev Mol Cell Biol 9: 402-412. doi: 10.1038/nrm2395 |
[24] | Hein O, Schwind M, Konig W (2006) Scale-free networks. The impact of fat tailed degree distribution on diffusion and communication processes.Wirschftsinformatik 48: 267-275. |
[25] | Zhou L, Aon MA, Almas T, et al. (2010) A reaction-diffusion model of ROS-induced ROS release in a mitochondrial network. PLOS Comp Biol 6: e1000657. doi: 10.1371/journal.pcbi.1000657 |
[26] | Larremore, DB, Shew WL, Restrepo JG (2011) Predicting criticality and dynamic range in complex networks: effects of topology. Phys Rev Let 106: 1580101. |
[27] | Nykter M, Price ND, Aldana M, et al. (2008) Gene expression dynamics in macrophage exhibit criticality. Proc Natl Acad Sci U S A 105: 1897-1900. doi: 10.1073/pnas.0711525105 |
[28] | Ito K, Gunji YP (1994) Self-organization of living systems towards criticality at the edge of chaos. Biosystems 33: 17-24. doi: 10.1016/0303-2647(94)90057-4 |
[29] | MacArthur BD, Sanchez-Garcia RJ, Ma’ayan A (2010) Microdynamics and criticality of adaptive regulatory networks. Phys Rev Let 104: 168701. doi: 10.1103/PhysRevLett.104.168701 |
[30] | Seeman TE, Singer BH, Rowe JW (1997) Price of adaption-allostatic load and its health consequences. MacArthur Studies of Successful Aging. Arch Intern Med 157: 2259-2268. |
[31] | McEwen BS (1998) Stress, adaption, and disease: Allostasis and allostatic load. Ann NY Acad Sci 840: 33-44. doi: 10.1111/j.1749-6632.1998.tb09546.x |
[32] | Picard M, Juster RP, McEwen BS (2014) Mitochondrial allostatic load puts the ‘gluc’ back in glucocorticoids. Nat Rev Endocrinol 10: 303-310. doi: 10.1038/nrendo.2014.22 |
[33] | Zalli A, Carvalho LA, Lin J, et al. (2014) Shorter telomeres with high telomerase activity are associated with raised allostatic load and impoverished psychosocial resources. Proc Natl Acad Sci U S A 111: 4519-4524. doi: 10.1073/pnas.1322145111 |
[34] | Dich N, Doan SN, Kivimaki M, et al. (2014) A non-linear association between self-reported negative emotional response to stress and subsequent allostatic load; Prospective results from the Whitehall II cohort study.Psychoneuroendocrinology 49: 54-61. |
[35] | Knox SS, Basu S, Remick S (2014) A systems approach to cancer health disparities in Appalachia.Austin J Pub Health 1: 10. |
[36] | Greaves M (2006) Infection, immune responses and the aetiology of childhood leukaemia. Nat RevCancer 6: 193-203. doi: 10.1038/nrc1816 |
[37] | Perez-Andreu V, Roberts KG, Harvey RC, et al. (2013) Inherited GATA3 variants are associated with Ph-like childhood acute lymphoblastic leukemia and risk of relapse. Nat Genet 12: 1491-1498. |
[38] | Chaturvedi MM, Sung B, Yadav VR, et al. (2011) NF-κβ addiction and its role in cancer: ‘one size does not fit all’. Oncogene 30: 1615-1630. doi: 10.1038/onc.2010.566 |
[39] | Gudmundsdottir K, Tryggvadottir L, Eyfjord JE (2011) GSTM1, GSTT1, and GSTP1 genotypes in relation breast cancer risk and frequency of mutations in the p53 gene. Cancer Epi Biomark Prev 10: 1169-1173. |
[40] | Joseph MA, Moysich KB, Freudenheim JL, et al. (2004) Cruciferous vegetables, genetic polymorphisms in glutathione S-transferases M1 and T1, and prostate cancer risk.Nutr Cancer 50: 206-213. doi: 10.1207/s15327914nc5002_11 |
[41] | Kamb A, Wee S, Lengauer C (2007) Why is cancer drug discovery so Difficult? Nat Rev/Drug Discov 6: 115-120. doi: 10.1038/nrd2155 |
[42] | Kerkela R, Grazette L, Yacobi R, et al. (2006) Cardiotoxicity of the cancer therapeutic agent imatinib mesylate. Nat Med 12: 908-916. doi: 10.1038/nm1446 |
[43] | Ferber D (2006) Wonder drug may not be so wonderful.Science July 24. |
[44] | Landier W, Bhatia S, Eshelman DA, et al. (2004) Development of risk-based guidelines for pediatric cancer survivors: The children’s oncology group long-term follow-up guidelines from the children’s oncology group late effects committee and nursing discipline. J Clin Oncol 22: 4979-4990. doi: 10.1200/JCO.2004.11.032 |
[45] | Global Burden of Disease: 2004 Update. World Health Organization 2008. ISBN 978 92 4 156371 0. Part 2, p. 10. |