[1]
|
Chapman EC, Capo RC, Stewart BW, et al. (2012) Geochemical and strontium isotope characterization of produced waters from Marcellus Shale natural gas extraction. Environ Sci Technol 46: 3545–3553. doi: 10.1021/es204005g
|
[2]
|
Osborn SG, Vengosh A, Warner NR, et al. (2011) Methane contamination of drinking water accompanying gas-well drilling and hydraulic fracturing. P Natl Acad Sci USA 108: 8172–8176. doi: 10.1073/pnas.1100682108
|
[3]
|
Kerr R (2010) Natural gas from shale bursts onto the scene. Science 328: 1624–1626. doi: 10.1126/science.328.5986.1624
|
[4]
|
EPA (2004) Chapter 4, Hydraulic fracturing fluids, In: Evaluation of impacts to underground sources of drinking water by hydraulic fracturing of coalbed methane reservoirs, EPA, 1–26.
|
[5]
|
Gregory KB, Vidic RD, Dzombak DA (2011) Water management challenges associated with the production of shale gas by hydraulic fracturing. Elements 7: 181–186. doi: 10.2113/gselements.7.3.181
|
[6]
|
Entrekin S, Evans-White M, Johnson B, et al. (2011) Rapid expansion of natural gas development poses a threat to surface waters. Front Ecol Environ 9: 503–511. doi: 10.1890/110053
|
[7]
|
Papoulias DM, Velasco AL (2013) Histopathological analysis of fish from Acorn Fork Creek, Kentucky, exposed to hydraulic fracturing fluid releases. Southeast Nat 12: 92–111.
|
[8]
|
Patnode KA, Hittle E, Anderson RM, et al. (2015) Effects of high salinity wastewater discharges on Unionid Mussels in the Allegheny River, Pennsylvania. J Fish Wildl Manag 6: 55–70. doi: 10.3996/052013-JFWM-033
|
[9]
|
Buonaccorsi VP, Malloy J, Peterson M, et al. (2017) Population genomic analysis of Brook Trout in Pennsylvania's Appalachian Region. T Am Fish Soc 146: 485–494. doi: 10.1080/00028487.2017.1285351
|
[10]
|
Lutz AK, Grant CJ (2016) Impacts of hydraulic fracturing development on macroinvertebrate biodiversity and gill morphology of net-spinning caddisfly (Hydropsychidae, Diplectrona) in northwestern Pennsylvania, USA. J Freshwater Ecol 31: 211–217. doi: 10.1080/02705060.2015.1082157
|
[11]
|
Trexler R, Solomon C, Brislawn CJ, et al. (2014) Assessing impacts of unconventional natural gas extraction on microbial communities in headwater stream ecosystems in Northwestern Pennsylvania. Front Microbiol 5: 522.
|
[12]
|
Grant CJ, Lutz AK, Kulig AD, et al. (2016) Fracked ecology: Response of aquatic trophic structure and mercury biomagnification dynamics in the Marcellus Shale Formation. Ecotoxicology 25: 1739–1750. doi: 10.1007/s10646-016-1717-8
|
[13]
|
Grant CJ, Weimer AB, Marks NK, et al. (2015) Marcellus and mercury: Assessing potential impacts of unconventional natural gas extraction on aquatic ecosystems in northwestern Pennsylvania. Environ Lett 50: 482–500.
|
[14]
|
Wilson B, Danilowicz BS, Meijer WG (2008) The diversity of bacterial communities associated with Atlantic cod Gadus morhua. Microbial Ecol 55: 425–434. doi: 10.1007/s00248-007-9288-0
|
[15]
|
Wotton RS (2004) The essential role of exopolymers (EPS) in aquatic systems. Oceanogr Mar Biol 42: 57–94.
|
[16]
|
Nigam AK, Kumari U, Mittal S, et al. (2012) Comparative analysis of innate immune parameters of the skin mucous secretions from certain freshwater teleosts, inhabiting different ecological niches. Fish Physiol Biochem 38: 1245–1256. doi: 10.1007/s10695-012-9613-5
|
[17]
|
Cooksey K, Wigglesworth-Cooksey B (1995) Adhesion of bacteria and diatoms to surfaces in the sea: A review. Aquat Microb Ecol 9: 87–96. doi: 10.3354/ame009087
|
[18]
|
Bordas MA, Balebona MC, Zorrilla I, et al. (1996) Kinetics of adhesion of selected fish-pathogenic Vibrio strains of skin mucus of gilt-head sea bream (Sparus aurata L.). Appl Environ Microb 62: 3650–3654.
|
[19]
|
Kargbo DM, Wilhelm RG, Campbell DJ (2010) Natural gas plays in the Marcellus shale: Challenges and potential opportunities. Environ Sci Technol 44: 5679–5684. doi: 10.1021/es903811p
|
[20]
|
Smith DR, Snyder CD, Hitt NP, et al. (2012) Environmental reviews and case studies: Shale gas development and brook trout: Scaling best management practices to anticipate cumulative effects. Environ Pract 14: 366–381. doi: 10.1017/S1466046612000397
|
[21]
|
Fausch KD, White RJ (1981) Competition between brook trout (Salvelinus fontinalis) and brown trout (Salmo trutta) for positions in a Michigan stream. Can J Fish Aquat Sci 38: 1220–1227. doi: 10.1139/f81-164
|
[22]
|
Larsen A, Tao Z, Bullard SA, et al. (2013) Diversity of the skin microbiota of fishes: Evidence for host species specificity. FEMS Microbiol Ecol 85: 483–494. doi: 10.1111/1574-6941.12136
|
[23]
|
Keller DH, Zelanko PM, Gagnon JE, et al. (In press) Linking otolith microchemistry and surface water contamination from natural gas mining. Environ Pollut 240: 457–465.
|
[24]
|
Hayes T (2009) Sampling and analysis of water streams associated with the development of Marcellus Shale Gas, Final Report, Gas Technology Institute.
|
[25]
|
Smith CJ, Danilowicz BS, Meijer WG (2007) Characterization of the bacterial community associated with the surface and mucus layer of whiting (Merlangius merlangus). FEMS Microbiol Ecol 62: 90–97. doi: 10.1111/j.1574-6941.2007.00369.x
|
[26]
|
Klindworth A, Pruesse E, Schweer T, et al. (2012) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res 41: e1. doi: 10.1093/nar/gks1297
|
[27]
|
Wang Q, Garrity GM, Tiedje JM, et al. (2007) Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microb 73: 5261–5267. doi: 10.1128/AEM.00062-07
|
[28]
|
Maranto CJ, Parrish JK, Herman DP, et al. (2011) Use of fatty acid analysis to determine dispersal of Caspian Terns in the Columbia River Basin, USA. Conserv Biol 25: 736–746. doi: 10.1111/j.1523-1739.2011.01706.x
|
[29]
|
Boutin S, Sauvage C, Bernatchez L, et al. (2014) Inter individual variations of the fish skin microbiota: Host genetics basis of mutualism? PLoS One 9: e102649. doi: 10.1371/journal.pone.0102649
|
[30]
|
Berendsen RL, Pieterse CMJ, Bakker PAHM (2012) The rhizosphere microbiome and plant health. Trends Plant Sci 17: 478–486. doi: 10.1016/j.tplants.2012.04.001
|
[31]
|
Reynolds L (2009) Update on Dunkard Creek, November 23, 2009.
|
[32]
|
Xia JH, Lin G, Fu GH, et al. (2014) The intestinal microbiome of fish under starvation. BMC Genomics 15: 266. doi: 10.1186/1471-2164-15-266
|
[33]
|
Hess S, Wenger AS, Ainsworth TD, et al. (2015) Exposure of clownfish larvae to suspended sediment levels found on the Great Barrier Reef: Impacts on gill structure and microbiome. Sci Rep 5: 10561. doi: 10.1038/srep10561
|
[34]
|
Anderson RL, Ordal EJ, Anderson RL, et al. (1961) Cytophaga succinicans sp. n., a facultatively anaerobic, aquatic myxobacterium. J Bacteriol 81: 130.
|
[35]
|
Christensen PJ (1977) The history, biology, and taxonomy of the Cytophaga group. Can J Microbiol 23: 1599–1653. doi: 10.1139/m77-236
|
[36]
|
Starliper CE (2011) Bacterial coldwater disease of fishes caused by Flavobacterium psychrophilum. J Adv Res 2: 97–108. doi: 10.1016/j.jare.2010.04.001
|
[37]
|
Boutin S, Bernatchez L, Audet C, et al. (2013) Network analysis highlights complex interactions between pathogen, host and commensal microbiota. PLoS One 8: e84772. doi: 10.1371/journal.pone.0084772
|
[38]
|
Fierer N, Morse JL, Berthrong ST, et al. (2007) Environmental controls on the landscape-scale biogeography of stream bacterial communities. Ecology 88: 2162–2173. doi: 10.1890/06-1746.1
|
[39]
|
Wu S, Wang G, Angert ER, et al. (2012) Composition, diversity, and origin of the bacterial community in grass carp intestine. PLoS One 7: e30440. doi: 10.1371/journal.pone.0030440
|
[40]
|
Carda-Diéguez M, Ghai R, Rodríguez-Valera F, et al. (2017) Wild eel microbiome reveals that skin mucus of fish could be a natural niche for aquatic mucosal pathogen evolution. Microbiome 5: 162. doi: 10.1186/s40168-017-0376-1
|
[41]
|
Ebran N, Julien S, Orange N, et al. (2000) Isolation and characterization of novel glycoproteins from fish epidermal mucus: Correlation between their pore-forming properties and their antibacterial activities. BBA-Biomembranes 1467: 271–280. doi: 10.1016/S0005-2736(00)00225-X
|
[42]
|
Bols NC, Brubacher JL, Ganassin RC, et al. (2001) Ecotoxicology and innate immunity in fish. Dev Comp Immunol 25: 853–873. doi: 10.1016/S0145-305X(01)00040-4
|
[43]
|
Mueller K, Ash C, Pennisi E, et al. (2012) The gut microbiota. Science 336: 1245. doi: 10.1126/science.336.6086.1245
|
[44]
|
Cook GM, Rothenberger JP, Sikaroodi M, et al. (2013) A comparison of culture-dependent and culture-independent techniques used to characterize bacterial communities on healthy and white plague-diseased corals of the Montastraea annularis species complex. Coral Reefs 32: 375–388. doi: 10.1007/s00338-012-0989-6
|
[45]
|
Olojo E, Amusa N, Osho A, et al. (2010) Commensal Bacterial Flora of Synodontis nigrita and Ciarias gariepinus from River Osun, Southwest Nigeria, Nigeria. Res J Appl Sci 5: 231–235.
|